Comparative GO Graph (mouse, human, rat)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes HOXD1
  • Mouse genes Hoxd1
  • Rat genes Hoxd1
  • Zfish genes hoxc1a
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Hoxd1

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:1990837	sequence-specific double-stranded DNA binding	HOXD1	IDA		Human	PMID:28473536
Cellular Component	GO:0005654	nucleoplasm	HOXD1	IDA		Human	GO_REF:0000052
Cellular Component	GO:0005634	nucleus	Hoxd1	IDA		Mouse	PMID:11209945
Biological Process	GO:0048706	embryonic skeletal system development	Hoxd1	IMP	MGI:MGI:3616015	Mouse	PMID:11511348
Biological Process	GO:0030182	neuron differentiation	Hoxd1	IMP	MGI:MGI:3526155	Mouse	PMID:21151121
Biological Process	GO:0019233	sensory perception of pain	Hoxd1	IMP	MGI:MGI:3526155	Mouse	PMID:21151121

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern