Comparative GO Graph (mouse, human, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes HMCN1
  • Mouse genes Hmcn1
  • Rat genes Hmcn1
  • Zfish genes hmcn1
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Hmcn1

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0005201	extracellular matrix structural constituent	HMCN1	HDA		Human	PMID:28344315
Molecular Function	GO:0005515	protein binding	HMCN1	IPI	UniProtKB:P0C7Q2	Human	PMID:19696174
Cellular Component	GO:0005604	basement membrane	Hmcn1	IDA		Mouse	MGI:MGI:6762317|PMID:34504132
Cellular Component	GO:0005604	basement membrane	Hmcn1	IDA		Mouse	MGI:MGI:6368983|PMID:29488390
Cellular Component	GO:0005604	basement membrane	Hmcn1	IDA		Mouse	MGI:MGI:6432649|PMID:32035013
Cellular Component	GO:0005604	basement membrane	Hmcn1	IDA		Mouse	PMID:17015624
Cellular Component	GO:0005938	cell cortex	Hmcn1	IDA		Mouse	PMID:17015624
Cellular Component	GO:0030054	cell junction	Hmcn1	IDA		Mouse	PMID:17015624
Cellular Component	GO:0062023	collagen-containing extracellular matrix	HMCN1	HDA		Human	PMID:28344315
Cellular Component	GO:0062023	collagen-containing extracellular matrix	Hmcn1	HDA		Mouse	MGI:MGI:6201834|PMID:22159717
Cellular Component	GO:0062023	collagen-containing extracellular matrix	Hmcn1	HDA		Mouse	MGI:MGI:6201853|PMID:28071719
Cellular Component	GO:0005737	cytoplasm	Hmcn1	IDA		Mouse	MGI:MGI:6368983|PMID:29488390
Cellular Component	GO:0070062	extracellular exosome	HMCN1	HDA		Human	PMID:23533145
Cellular Component	GO:0005576	extracellular region	Hmcn1	IDA		Mouse	PMID:17015624
Cellular Component	GO:0005927	muscle tendon junction	Hmcn1	IDA		Mouse	MGI:MGI:6762317|PMID:34504132
Biological Process	GO:0090527	actin filament reorganization	HMCN1	IMP		Human	PMID:29488390
Biological Process	GO:0071711	basement membrane organization	Hmcn1	IMP		Mouse	MGI:MGI:6762317|PMID:34504132
Biological Process	GO:0071711	basement membrane organization	hmcn1	IMP	ZFIN:ZDB-GENO-100420-7	Zfish	PMID:20419147
Biological Process	GO:0033333	fin development	hmcn1	IMP		Zfish	PMID:9007245
Biological Process	GO:0033334	fin morphogenesis	hmcn1	IMP	ZFIN:ZDB-GENO-100420-7	Zfish	PMID:20419147
Biological Process	GO:0009617	response to bacterium	Hmcn1	IEP		Mouse	PMID:23012479

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern