Comparative GO Graph (mouse, human, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes HDGFL3
  • Mouse genes Hdgfl3
  • Rat genes Hdgfl3
  • Zfish genes hdgfl3
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Hdgfl3

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0008017	microtubule binding	Hdgfl3	IDA		Mouse	MGI:MGI:3849122|PMID:19237540
Molecular Function	GO:0005515	protein binding	Hdgfl3	IPI	UniProtKB:Q9JMG7	Mouse	MGI:MGI:3849122|PMID:19237540
Molecular Function	GO:0015631	tubulin binding	Hdgfl3	IDA		Mouse	MGI:MGI:3849122|PMID:19237540
Cellular Component	GO:0005737	cytoplasm	Hdgfl3	IDA		Mouse	PMID:14572309
Cellular Component	GO:0005829	cytosol	Hdgfl3	IDA		Mouse	MGI:MGI:3849122|PMID:19237540
Cellular Component	GO:0005576	extracellular region	HDGFL3	HDA		Human	PMID:27068509
Cellular Component	GO:0005654	nucleoplasm	HDGFL3	IDA		Human	GO_REF:0000052
Cellular Component	GO:0005634	nucleus	HDGFL3	IDA		Human	PMID:10581169
Cellular Component	GO:0005634	nucleus	Hdgfl3	IDA		Mouse	MGI:MGI:3849122|PMID:19237540
Cellular Component	GO:0005634	nucleus	Hdgfl3	IDA		Mouse	PMID:14572309
Biological Process	GO:0046785	microtubule polymerization	Hdgfl3	IDA		Mouse	MGI:MGI:3849122|PMID:19237540
Biological Process	GO:0007026	negative regulation of microtubule depolymerization	Hdgfl3	IDA		Mouse	MGI:MGI:3849122|PMID:19237540
Biological Process	GO:0031175	neuron projection development	Hdgfl3	IMP		Mouse	MGI:MGI:3849122|PMID:19237540
Biological Process	GO:0048793	pronephros development	hdgfl3	IMP	ZFIN:ZDB-MRPHLNO-200217-1	Zfish	PMID:29795395

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern