Comparative GO Graph (mouse, human, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes EP400
  • Mouse genes Ep400
  • Rat genes Ep400
  • Zfish genes ep400
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Ep400

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0003682	chromatin binding	Ep400	IDA		Rat	PMID:12776177|RGD:1302285
Molecular Function	GO:1990405	protein antigen binding	Ep400	IPI	UniProtKB:P03070	Rat	PMID:8985331|RGD:2312284
Molecular Function	GO:0005515	protein binding	EP400	IPI	UniProtKB:Q9Y230	Human	PMID:16601686
Molecular Function	GO:0005515	protein binding	EP400	IPI	UniProtKB:P01106	Human	PMID:17314511
Molecular Function	GO:0005515	protein binding	EP400	IPI	UniProtKB:P01106	Human	PMID:18413597
Molecular Function	GO:0005515	protein binding	EP400	IPI	UniProtKB:P01106	Human	PMID:21150319
Molecular Function	GO:0005515	protein binding	EP400	IPI	UniProtKB:P13196	Human	PMID:21516116
Molecular Function	GO:0005515	protein binding	EP400	IPI	UniProtKB:P13196	Human	PMID:25416956
Molecular Function	GO:0005515	protein binding	EP400	IPI	UniProtKB:Q9Y230	Human	PMID:28514442
Molecular Function	GO:0005515	protein binding	EP400	IPI	UniProtKB:Q93009	Human	PMID:35044719
Molecular Function	GO:0005515	protein binding	EP400	IPI	UniProtKB:P01106	Human	PMID:35140242
Molecular Function	GO:0005515	protein binding	Ep400	IPI	UniProtKB:P83870	Mouse	MGI:MGI:4839441|PMID:18758164
Cellular Component	GO:0035267	NuA4 histone acetyltransferase complex	EP400	IDA		Human	PMID:27153538
Cellular Component	GO:0035267	NuA4 histone acetyltransferase complex	EP400	IDA		Human	PMID:14966270
Cellular Component	GO:0016607	nuclear speck	Ep400	IDA		Mouse	MGI:MGI:4839441|PMID:18758164
Cellular Component	GO:0000786	nucleosome	EP400	IDA		Human	PMID:27153538
Cellular Component	GO:0005634	nucleus	Ep400	IDA		Rat	PMID:12776177|RGD:1302285
Cellular Component	GO:0000812	Swr1 complex	EP400	IDA		Human	PMID:24463511
Biological Process	GO:0043968	histone H2A acetylation	EP400	IDA		Human	PMID:27153538
Biological Process	GO:0043967	histone H4 acetylation	EP400	IDA		Human	PMID:27153538
Biological Process	GO:1905168	positive regulation of double-strand break repair via homologous recombination	EP400	IDA		Human	PMID:27153538
Biological Process	GO:0051726	regulation of cell cycle	EP400	IMP		Human	PMID:27153538

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern