Comparative GO Graph (mouse, human, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes ECM2
  • Mouse genes Ecm2
  • Rat genes
  • Zfish genes ecm2
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Ecm2

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0005518	collagen binding	Ecm2	IDA		Mouse	PMID:18757743
Molecular Function	GO:0070052	collagen V binding	Ecm2	IDA		Mouse	PMID:18757743
Molecular Function	GO:0008201	heparin binding	Ecm2	IDA		Mouse	PMID:18757743
Molecular Function	GO:0005515	protein binding	Ecm2	IPI	UniProtKB:Q6PDM1|UniProtKB:Q99MK9	Mouse	MGI:MGI:3706282|PMID:17335777
Cellular Component	GO:0031012	extracellular matrix	Ecm2	IDA		Mouse	PMID:18757743
Cellular Component	GO:0005614	interstitial matrix	Ecm2	IDA		Mouse	PMID:18757743
Biological Process	GO:0030198	extracellular matrix organization	Ecm2	IDA		Mouse	PMID:18757743
Biological Process	GO:0010811	positive regulation of cell-substrate adhesion	Ecm2	IDA		Mouse	PMID:18757743

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern