Comparative GO Graph (mouse, human, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes DDX56
  • Mouse genes Ddx56
  • Rat genes Ddx56
  • Zfish genes ddx56
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Ddx56

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0005515	protein binding	DDX56	IPI	UniProtKB:P38919	Human	PMID:32296183
Molecular Function	GO:0140311	protein sequestering activity	DDX56	IDA		Human	PMID:31340999
Molecular Function	GO:0003723	RNA binding	DDX56	HDA		Human	PMID:22658674
Molecular Function	GO:0035613	RNA stem-loop binding	DDX56	IDA		Human	PMID:33109765
Cellular Component	GO:0005829	cytosol	DDX56	IDA		Human	PMID:33109765
Cellular Component	GO:0016020	membrane	DDX56	HDA		Human	PMID:19946888
Cellular Component	GO:0005730	nucleolus	DDX56	IDA		Human	GO_REF:0000054
Cellular Component	GO:0005730	nucleolus	DDX56	IDA		Human	PMID:33109765
Cellular Component	GO:0005730	nucleolus	Ddx56	IDA		Mouse	PMID:2506639
Cellular Component	GO:0005634	nucleus	DDX56	IDA		Human	PMID:31340999
Biological Process	GO:0051607	defense response to virus	DDX56	IDA		Human	PMID:33109765
Biological Process	GO:0044830	modulation by host of viral RNA genome replication	DDX56	IMP		Human	PMID:33109765
Biological Process	GO:0032480	negative regulation of type I interferon production	DDX56	IDA		Human	PMID:31340999
Biological Process	GO:0010976	positive regulation of neuron projection development	Ddx56	IMP		Rat	PMID:11823437|RGD:10755407

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern