Comparative GO Graph (mouse, human, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes DDX47
  • Mouse genes Ddx47
  • Rat genes Ddx47
  • Zfish genes ddx47
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Ddx47

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0005515	protein binding	DDX47	IPI	UniProtKB:O95166	Human	PMID:15977068
Molecular Function	GO:0005515	protein binding	DDX47	IPI	UniProtKB:Q76FK4	Human	PMID:16963496
Molecular Function	GO:0005515	protein binding	DDX47	IPI	UniProtKB:Q9UKV8	Human	PMID:17932509
Molecular Function	GO:0005515	protein binding	DDX47	IPI	UniProtKB:Q9UL18	Human	PMID:17932509
Molecular Function	GO:0003723	RNA binding	DDX47	HDA		Human	PMID:22658674
Molecular Function	GO:0003723	RNA binding	DDX47	HDA		Human	PMID:22681889
Cellular Component	GO:0016020	membrane	DDX47	HDA		Human	PMID:19946888
Cellular Component	GO:0005730	nucleolus	DDX47	IDA		Human	GO_REF:0000052
Cellular Component	GO:0005730	nucleolus	DDX47	IDA		Human	GO_REF:0000054
Cellular Component	GO:0005730	nucleolus	DDX47	IDA		Human	PMID:16963496
Biological Process	GO:0008625	extrinsic apoptotic signaling pathway via death domain receptors	DDX47	IDA		Human	PMID:15977068
Biological Process	GO:0008380	RNA splicing	DDX47	IMP		Human	PMID:16963496
Biological Process	GO:0006364	rRNA processing	DDX47	IMP		Human	PMID:16963496

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern