Comparative GO Graph (mouse, human, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes DDX23
  • Mouse genes Ddx23
  • Rat genes Ddx23
  • Zfish genes ddx23
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Ddx23

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0005515	protein binding	DDX23	IPI	UniProtKB:Q15303	Human	PMID:20858735
Molecular Function	GO:0005515	protein binding	DDX23	IPI	UniProtKB:P54274	Human	PMID:21044950
Molecular Function	GO:0005515	protein binding	DDX23	IPI	UniProtKB:Q03468	Human	PMID:26030138
Molecular Function	GO:0005515	protein binding	DDX23	IPI	UniProtKB:Q96DI7	Human	PMID:28514442
Molecular Function	GO:0005515	protein binding	DDX23	IPI	UniProtKB:Q96DI7	Human	PMID:9774689
Molecular Function	GO:0003723	RNA binding	DDX23	HDA		Human	PMID:22681889
Cellular Component	GO:0071013	catalytic step 2 spliceosome	DDX23	IDA		Human	PMID:11991638
Cellular Component	GO:0000785	chromatin	DDX23	IDA		Human	PMID:28076779
Cellular Component	GO:0070062	extracellular exosome	DDX23	HDA		Human	PMID:19199708
Cellular Component	GO:0005730	nucleolus	DDX23	IDA		Human	GO_REF:0000052
Cellular Component	GO:0005654	nucleoplasm	DDX23	IDA		Human	GO_REF:0000052
Cellular Component	GO:0005634	nucleus	DDX23	IDA		Human	PMID:28076779
Cellular Component	GO:0046540	U4/U6 x U5 tri-snRNP complex	DDX23	IPI		Human	PMID:30975767
Cellular Component	GO:0046540	U4/U6 x U5 tri-snRNP complex	DDX23	IDA		Human	PMID:9409622
Cellular Component	GO:0005682	U5 snRNP	DDX23	IDA		Human	PMID:9539711
Biological Process	GO:0062176	R-loop processing	DDX23	IDA		Human	PMID:28076779

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern