Comparative GO Graph (mouse, human, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes CSDE1
  • Mouse genes Csde1
  • Rat genes Csde1,LOC100364335
  • Zfish genes csde1
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Csde1

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0005515	protein binding	CSDE1	IPI	UniProtKB:Q8IV36	Human	PMID:25416956
Molecular Function	GO:0005515	protein binding	CSDE1	IPI	UniProtKB:Q8IZU0	Human	PMID:25416956
Molecular Function	GO:0005515	protein binding	CSDE1	IPI	UniProtKB:Q9NRA8	Human	PMID:27342281
Molecular Function	GO:0003723	RNA binding	CSDE1	HDA		Human	PMID:22658674
Molecular Function	GO:0003723	RNA binding	CSDE1	HDA		Human	PMID:22681889
Molecular Function	GO:0035613	RNA stem-loop binding	CSDE1	IDA		Human	PMID:17947529
Cellular Component	GO:0070937	CRD-mediated mRNA stability complex	CSDE1	IDA		Human	PMID:15314026
Cellular Component	GO:0005829	cytosol	CSDE1	IDA		Human	GO_REF:0000052
Cellular Component	GO:0005829	cytosol	CSDE1	IDA		Human	PMID:11051545
Cellular Component	GO:0005794	Golgi apparatus	CSDE1	IDA		Human	GO_REF:0000052
Cellular Component	GO:0106002	mCRD-mediated mRNA stability complex	CSDE1	IPI		Human	PMID:11051545
Cellular Component	GO:0005743	mitochondrial inner membrane	Csde1	HDA		Mouse	PMID:12865426
Cellular Component	GO:0005886	plasma membrane	CSDE1	IDA		Human	GO_REF:0000052
Biological Process	GO:0070934	CRD-mediated mRNA stabilization	CSDE1	IDA		Human	PMID:11051545
Biological Process	GO:0075522	IRES-dependent viral translational initiation	CSDE1	IDA		Human	PMID:17947529
Biological Process	GO:1900152	negative regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay	CSDE1	IDA		Human	PMID:11051545
Biological Process	GO:0070966	nuclear-transcribed mRNA catabolic process, no-go decay	CSDE1	IMP		Human	PMID:15314026
Biological Process	GO:2000767	positive regulation of cytoplasmic translation	CSDE1	IDA		Human	PMID:11051545
Biological Process	GO:0034063	stress granule assembly	CSDE1	IMP		Human	PMID:29395067

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern