Comparative GO Graph (mouse, human, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes CRNKL1
  • Mouse genes Crnkl1
  • Rat genes Crnkl1
  • Zfish genes crnkl1
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Crnkl1

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0005515	protein binding	CRNKL1	IPI	UniProtKB:Q8WUD4	Human	PMID:22365833
Molecular Function	GO:0003723	RNA binding	CRNKL1	IDA		Human	PMID:12084575
Molecular Function	GO:0003723	RNA binding	CRNKL1	HDA		Human	PMID:22681889
Cellular Component	GO:0071013	catalytic step 2 spliceosome	CRNKL1	IDA		Human	PMID:11991638
Cellular Component	GO:0005634	nucleus	CRNKL1	IDA		Human	PMID:28076346
Cellular Component	GO:0005681	spliceosomal complex	CRNKL1	IDA		Human	PMID:11991638
Cellular Component	GO:0071007	U2-type catalytic step 2 spliceosome	CRNKL1	IDA		Human	PMID:28076346
Biological Process	GO:1990416	cellular response to brain-derived neurotrophic factor stimulus	Crnkl1	IEP		Rat	PMID:12801913|RGD:634609
Biological Process	GO:1990830	cellular response to leukemia inhibitory factor	Crnkl1	IEP		Rat	PMID:12801913|RGD:634609
Biological Process	GO:0021987	cerebral cortex development	Crnkl1	IEP		Rat	PMID:12801913|RGD:634609
Biological Process	GO:0000398	mRNA splicing, via spliceosome	CRNKL1	IDA		Human	PMID:28076346
Biological Process	GO:0000245	spliceosomal complex assembly	CRNKL1	IDA		Human	PMID:12084575

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern