Comparative GO Graph (mouse, human, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes CPSF1
  • Mouse genes Cpsf1
  • Rat genes Cpsf1
  • Zfish genes cpsf1
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Cpsf1

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0019899	enzyme binding	CPSF1	IPI	UniProtKB:P51003	Human	PMID:7590244
Molecular Function	GO:0035925	mRNA 3'-UTR AU-rich region binding	CPSF1	IDA		Human	PMID:7590244
Molecular Function	GO:0005515	protein binding	CPSF1	IPI	UniProtKB:Q9H6E5	Human	PMID:21102410
Molecular Function	GO:0005515	protein binding	CPSF1	IPI	UniProtKB:P06748	Human	PMID:21822216
Molecular Function	GO:0005515	protein binding	CPSF1	IPI	UniProtKB:Q04864	Human	PMID:25416956
Molecular Function	GO:0005515	protein binding	CPSF1	IPI	UniProtKB:Q0VD86	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	CPSF1	IPI	UniProtKB:Q96D03	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	CPSF1	IPI	UniProtKB:Q12996	Human	PMID:7590244
Cellular Component	GO:0005847	mRNA cleavage and polyadenylation specificity factor complex	CPSF1	IDA		Human	PMID:21102410
Cellular Component	GO:0005847	mRNA cleavage and polyadenylation specificity factor complex	CPSF1	IDA		Human	PMID:7590244
Cellular Component	GO:0005654	nucleoplasm	CPSF1	IDA		Human	GO_REF:0000052
Biological Process	GO:0060216	definitive hemopoiesis	cpsf1	IMP	ZFIN:ZDB-GENO-120523-17	Zfish	PMID:21330472
Biological Process	GO:0060216	definitive hemopoiesis	cpsf1	IMP	ZFIN:ZDB-MRPHLNO-120523-7	Zfish	PMID:21330472
Biological Process	GO:0060216	definitive hemopoiesis	cpsf1	IMP	ZFIN:ZDB-GENO-120524-3	Zfish	PMID:21330472
Biological Process	GO:0006378	mRNA polyadenylation	CPSF1	IMP		Human	PMID:7590244
Biological Process	GO:0006378	mRNA polyadenylation	cpsf1	IMP	ZFIN:ZDB-GENO-120524-3	Zfish	PMID:21330472
Biological Process	GO:0031290	retinal ganglion cell axon guidance	cpsf1	IMP	ZFIN:ZDB-MRPHLNO-120523-7	Zfish	PMID:30689892

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern