Comparative GO Graph (mouse, human, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes COL9A1
  • Mouse genes Col9a1
  • Rat genes Col9a1
  • Zfish genes col9a1a,col9a1b
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Col9a1

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0030246	carbohydrate binding	COL9A1	EXP		Human	PMID:15047691
Molecular Function	GO:0030246	carbohydrate binding	COL9A1	IMP		Human	PMID:15047691
Molecular Function	GO:0030246	carbohydrate binding	COL9A1	IPI	ChEBI:28304	Human	PMID:15047691
Molecular Function	GO:0030246	carbohydrate binding	COL9A1	IPI	ChEBI:28304	Human	PMID:17553797
Molecular Function	GO:0005515	protein binding	COL9A1	IPI	UniProtKB:P35444	Human	PMID:15047691
Molecular Function	GO:0005515	protein binding	COL9A1	IPI	UniProtKB:O14908-2	Human	PMID:32814053
Molecular Function	GO:0005515	protein binding	COL9A1	IPI	UniProtKB:P02489	Human	PMID:32814053
Molecular Function	GO:0005515	protein binding	COL9A1	IPI	UniProtKB:Q92876	Human	PMID:32814053
Cellular Component	GO:0005594	collagen type IX trimer	COL9A1	IDA		Human	PMID:8660302
Cellular Component	GO:0062023	collagen-containing extracellular matrix	COL9A1	HDA		Human	PMID:25037231
Biological Process	GO:0060349	bone morphogenesis	Col9a1	IGI	MGI:MGI:88469	Mouse	PMID:18191556
Biological Process	GO:0051216	cartilage development	Col9a1	IMP	MGI:MGI:2152964	Mouse	PMID:11680679
Biological Process	GO:0051216	cartilage development	Col9a1	IGI	MGI:MGI:88469	Mouse	PMID:18191556
Biological Process	GO:0002062	chondrocyte differentiation	Col9a1	IEP		Rat	PMID:8992886|RGD:1600950
Biological Process	GO:0035988	chondrocyte proliferation	Col9a1	IGI	MGI:MGI:88469	Mouse	PMID:18191556
Biological Process	GO:0003417	growth plate cartilage development	Col9a1	IGI	MGI:MGI:98737	Mouse	PMID:18467703
Biological Process	GO:0003417	growth plate cartilage development	Col9a1	IGI	MGI:MGI:88469	Mouse	PMID:18191556
Biological Process	GO:0003417	growth plate cartilage development	Col9a1	IGI	MGI:MGI:88469	Mouse	PMID:18467703
Biological Process	GO:0003417	growth plate cartilage development	Col9a1	IGI	MGI:MGI:98739	Mouse	PMID:18467703
Biological Process	GO:0003417	growth plate cartilage development	Col9a1	IMP	MGI:MGI:2152964	Mouse	PMID:18467703
Biological Process	GO:0001501	skeletal system development	Col9a1	IGI	MGI:MGI:88469	Mouse	PMID:18191556
Biological Process	GO:0001894	tissue homeostasis	Col9a1	IMP	MGI:MGI:2152964	Mouse	PMID:8197187

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern