Comparative GO Graph (mouse, human, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes COL27A1
  • Mouse genes Col27a1
  • Rat genes Col27a1
  • Zfish genes col27a1a,col27a1b
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Col27a1

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0005201	extracellular matrix structural constituent	Col27a1	IDA		Mouse	PMID:22206015
Molecular Function	GO:0030020	extracellular matrix structural constituent conferring tensile strength	COL27A1	HDA		Human	PMID:28344315
Cellular Component	GO:0062023	collagen-containing extracellular matrix	COL27A1	HDA		Human	PMID:28344315
Cellular Component	GO:0062023	collagen-containing extracellular matrix	Col27a1	HDA		Mouse	MGI:MGI:6201834|PMID:22159717
Cellular Component	GO:0062023	collagen-containing extracellular matrix	Col27a1	HDA		Mouse	MGI:MGI:6201853|PMID:28071719
Cellular Component	GO:0005583	fibrillar collagen trimer	Col27a1	IDA		Mouse	PMID:17331945
Biological Process	GO:0030282	bone mineralization	col27a1a	IGI	ZFIN:ZDB-MRPHLNO-100119-2,ZFIN:ZDB-MRPHLNO-100119-4	Zfish	PMID:20041163
Biological Process	GO:0030282	bone mineralization	col27a1a	IMP	ZFIN:ZDB-MRPHLNO-100119-1,ZFIN:ZDB-MRPHLNO-100119-2	Zfish	PMID:20041163
Biological Process	GO:0030282	bone mineralization	col27a1b	IGI	ZFIN:ZDB-MRPHLNO-100119-2,ZFIN:ZDB-MRPHLNO-100119-4	Zfish	PMID:20041163
Biological Process	GO:0030198	extracellular matrix organization	Col27a1	IMP	MGI:MGI:5315593	Mouse	PMID:22206015
Biological Process	GO:0003431	growth plate cartilage chondrocyte development	Col27a1	IMP	MGI:MGI:5315593	Mouse	PMID:22206015
Biological Process	GO:0048570	notochord morphogenesis	col27a1a	IMP	ZFIN:ZDB-MRPHLNO-100119-1,ZFIN:ZDB-MRPHLNO-100119-2	Zfish	PMID:20041163
Biological Process	GO:0048570	notochord morphogenesis	col27a1a	IGI	ZFIN:ZDB-MRPHLNO-100119-2,ZFIN:ZDB-MRPHLNO-100119-4	Zfish	PMID:20041163
Biological Process	GO:0048570	notochord morphogenesis	col27a1b	IGI	ZFIN:ZDB-MRPHLNO-100119-2,ZFIN:ZDB-MRPHLNO-100119-4	Zfish	PMID:20041163
Biological Process	GO:0001501	skeletal system development	col27a1a	IMP	ZFIN:ZDB-MRPHLNO-100119-1,ZFIN:ZDB-MRPHLNO-100119-2	Zfish	PMID:20041163
Biological Process	GO:0001501	skeletal system development	col27a1a	IGI	ZFIN:ZDB-MRPHLNO-100119-2,ZFIN:ZDB-MRPHLNO-100119-4	Zfish	PMID:20041163
Biological Process	GO:0001501	skeletal system development	col27a1b	IGI	ZFIN:ZDB-MRPHLNO-100119-2,ZFIN:ZDB-MRPHLNO-100119-4	Zfish	PMID:20041163

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern