Comparative GO Graph (mouse, human, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes COL16A1
  • Mouse genes Col16a1
  • Rat genes Col16a1
  • Zfish genes col16a1
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Col16a1

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0030020	extracellular matrix structural constituent conferring tensile strength	COL16A1	HDA		Human	PMID:28344315
Molecular Function	GO:0005178	integrin binding	COL16A1	IDA		Human	PMID:16754661
Molecular Function	GO:0005515	protein binding	COL16A1	IPI	UniProtKB:P02751	Human	PMID:15165854
Molecular Function	GO:0005515	protein binding	COL16A1	IPI	UniProtKB:P35555	Human	PMID:15165854
Molecular Function	GO:0005515	protein binding	COL16A1	IPI	UniProtKB:P05556	Human	PMID:16754661
Molecular Function	GO:0005515	protein binding	COL16A1	IPI	UniProtKB:P17301	Human	PMID:16754661
Molecular Function	GO:0005515	protein binding	COL16A1	IPI	UniProtKB:P56199	Human	PMID:16754661
Cellular Component	GO:0062023	collagen-containing extracellular matrix	COL16A1	HDA		Human	PMID:27068509
Cellular Component	GO:0062023	collagen-containing extracellular matrix	COL16A1	HDA		Human	PMID:28327460
Cellular Component	GO:0062023	collagen-containing extracellular matrix	COL16A1	HDA		Human	PMID:28344315
Cellular Component	GO:0062023	collagen-containing extracellular matrix	COL16A1	HDA		Human	PMID:25037231
Cellular Component	GO:0062023	collagen-containing extracellular matrix	COL16A1	HDA		Human	PMID:28675934
Cellular Component	GO:0062023	collagen-containing extracellular matrix	Col16a1	HDA		Mouse	MGI:MGI:6201834|PMID:22159717
Cellular Component	GO:0062023	collagen-containing extracellular matrix	Col16a1	HDA		Mouse	MGI:MGI:6201853|PMID:28071719
Biological Process	GO:0007155	cell adhesion	COL16A1	IDA		Human	PMID:16754661
Biological Process	GO:0033627	cell adhesion mediated by integrin	COL16A1	IDA		Human	PMID:16754661
Biological Process	GO:0071230	cellular response to amino acid stimulus	Col16a1	IDA		Mouse	PMID:20548288
Biological Process	GO:0033622	integrin activation	COL16A1	IDA		Human	PMID:16754661
Biological Process	GO:0051894	positive regulation of focal adhesion assembly	COL16A1	IDA		Human	PMID:24466237

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern