Comparative GO Graph (mouse, human, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes COL12A1
  • Mouse genes Col12a1
  • Rat genes Col12a1
  • Zfish genes col12a1a,col12a1b
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Col12a1

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Cellular Component	GO:0005595	collagen type XII trimer	Col12a1	IDA		Rat	PMID:10419532|RGD:727275
Cellular Component	GO:0062023	collagen-containing extracellular matrix	COL12A1	HDA		Human	PMID:20551380
Cellular Component	GO:0062023	collagen-containing extracellular matrix	COL12A1	HDA		Human	PMID:23658023
Cellular Component	GO:0062023	collagen-containing extracellular matrix	COL12A1	HDA		Human	PMID:23979707
Cellular Component	GO:0062023	collagen-containing extracellular matrix	COL12A1	HDA		Human	PMID:28327460
Cellular Component	GO:0062023	collagen-containing extracellular matrix	COL12A1	HDA		Human	PMID:25037231
Cellular Component	GO:0062023	collagen-containing extracellular matrix	COL12A1	HDA		Human	PMID:28675934
Cellular Component	GO:0062023	collagen-containing extracellular matrix	Col12a1	HDA		Mouse	MGI:MGI:6201853|PMID:28071719
Cellular Component	GO:0062023	collagen-containing extracellular matrix	Col12a1	HDA		Mouse	MGI:MGI:5582867|PMID:23658023
Cellular Component	GO:0062023	collagen-containing extracellular matrix	Col12a1	HDA		Mouse	MGI:MGI:6201834|PMID:22159717
Cellular Component	GO:0070062	extracellular exosome	COL12A1	HDA		Human	PMID:21362503
Cellular Component	GO:0005576	extracellular region	COL12A1	HDA		Human	PMID:27068509
Cellular Component	GO:0005615	extracellular space	COL12A1	HDA		Human	PMID:20551380
Cellular Component	GO:0005615	extracellular space	Col12a1	HDA		Mouse	MGI:MGI:5640941|PMID:24006456
Cellular Component	GO:1903561	extracellular vesicle	COL12A1	HDA		Human	PMID:24769233
Biological Process	GO:0035987	endodermal cell differentiation	COL12A1	IEP		Human	PMID:23154389
Biological Process	GO:0031099	regeneration	col12a1a	IGI	ZFIN:ZDB-GENE-120215-116	Zfish	PMID:28743881
Biological Process	GO:0031099	regeneration	col12a1b	IGI	ZFIN:ZDB-GENE-090728-1	Zfish	PMID:28743881
Biological Process	GO:0048679	regulation of axon regeneration	col12a1a	IGI	ZFIN:ZDB-GENE-120215-116	Zfish	PMID:28743881
Biological Process	GO:0048679	regulation of axon regeneration	col12a1b	IGI	ZFIN:ZDB-GENE-090728-1	Zfish	PMID:28743881

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern