Comparative GO Graph (mouse, human, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes BGN
  • Mouse genes Bgn
  • Rat genes Bgn
  • Zfish genes bgna,bgnb
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Bgn

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0019955	cytokine binding	Bgn	IPI	PR:P48030	Mouse	PMID:15572151
Molecular Function	GO:0050840	extracellular matrix binding	Bgn	IDA		Mouse	PMID:18757743
Molecular Function	GO:0005539	glycosaminoglycan binding	Bgn	IDA		Mouse	PMID:18757743
Molecular Function	GO:0005515	protein binding	BGN	IPI	UniProtKB:O95388	Human	PMID:11598131
Molecular Function	GO:0005515	protein binding	BGN	IPI	UniProtKB:Q58EX7-2	Human	PMID:32814053
Molecular Function	GO:0005515	protein binding	BGN	IPI	UniProtKB:Q8WXH2	Human	PMID:32814053
Molecular Function	GO:0005515	protein binding	BGN	IPI	UniProtKB:Q9BRK4	Human	PMID:32814053
Molecular Function	GO:0005515	protein binding	BGN	IPI	UniProtKB:Q9H410	Human	PMID:32814053
Molecular Function	GO:0005515	protein binding	BGN	IPI	UniProtKB:Q9UBQ0-2	Human	PMID:32814053
Cellular Component	GO:0009986	cell surface	BGN	IDA		Human	PMID:2212616
Cellular Component	GO:0062023	collagen-containing extracellular matrix	BGN	HDA		Human	PMID:20551380
Cellular Component	GO:0062023	collagen-containing extracellular matrix	BGN	HDA		Human	PMID:27559042
Cellular Component	GO:0062023	collagen-containing extracellular matrix	BGN	HDA		Human	PMID:28327460
Cellular Component	GO:0062023	collagen-containing extracellular matrix	BGN	HDA		Human	PMID:25037231
Cellular Component	GO:0062023	collagen-containing extracellular matrix	BGN	HDA		Human	PMID:28675934
Cellular Component	GO:0062023	collagen-containing extracellular matrix	Bgn	HDA		Mouse	MGI:MGI:6201834|PMID:22159717
Cellular Component	GO:0062023	collagen-containing extracellular matrix	Bgn	HDA		Mouse	MGI:MGI:6201853|PMID:28071719
Cellular Component	GO:0070062	extracellular exosome	BGN	HDA		Human	PMID:19056867
Cellular Component	GO:0070062	extracellular exosome	BGN	HDA		Human	PMID:23533145
Cellular Component	GO:0031012	extracellular matrix	Bgn	IDA		Mouse	PMID:16810681
Cellular Component	GO:0031012	extracellular matrix	Bgn	IDA		Mouse	PMID:23900597
Cellular Component	GO:0005576	extracellular region	BGN	HDA		Human	PMID:27068509
Cellular Component	GO:0005622	intracellular anatomical structure	Bgn	IDA		Mouse	PMID:16810681
Cellular Component	GO:0042383	sarcolemma	Bgn	IDA		Mouse	PMID:16810681
Cellular Component	GO:0030133	transport vesicle	BGN	IDA		Human	GO_REF:0000054
Biological Process	GO:0061975	articular cartilage development	Bgn	IGI	MGI:107942	Mouse	PMID:19932218
Biological Process	GO:0001974	blood vessel remodeling	Bgn	IEP		Rat	PMID:11728008|RGD:631310
Biological Process	GO:0060348	bone development	Bgn	IGI	MGI:107942	Mouse	PMID:19932218
Biological Process	GO:0019800	peptide cross-linking via chondroitin 4-sulfate glycosaminoglycan	Bgn	IDA		Mouse	PMID:18757743

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern