Comparative GO Graph (mouse, human, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes BCO1
  • Mouse genes Bco1
  • Rat genes Bco1
  • Zfish genes bco1,bco1l
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Bco1

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0003834	beta-carotene 15,15'-dioxygenase activity	BCO1	IDA		Human	PMID:11401432
Molecular Function	GO:0003834	beta-carotene 15,15'-dioxygenase activity	BCO1	IMP		Human	PMID:17951468
Molecular Function	GO:0003834	beta-carotene 15,15'-dioxygenase activity	BCO1	IDA		Human	PMID:24668807
Molecular Function	GO:0003834	beta-carotene 15,15'-dioxygenase activity	Bco1	IMP		Mouse	MGI:MGI:3587559|PMID:15951442
Molecular Function	GO:0003834	beta-carotene 15,15'-dioxygenase activity	Bco1	IDA		Mouse	MGI:MGI:1931377|PMID:11092891
Molecular Function	GO:0003834	beta-carotene 15,15'-dioxygenase activity	Bco1	IDA		Rat	PMID:12468597|RGD:634627
Molecular Function	GO:0003834	beta-carotene 15,15'-dioxygenase activity	bco1	IDA		Zfish	PMID:12668631
Biological Process	GO:1901810	beta-carotene metabolic process	Bco1	IMP	MGI:MGI:3767552	Mouse	PMID:25701869
Biological Process	GO:0016121	carotene catabolic process	BCO1	IDA		Human	PMID:11401432
Biological Process	GO:0016121	carotene catabolic process	BCO1	IMP		Human	PMID:17951468
Biological Process	GO:0016121	carotene catabolic process	BCO1	IDA		Human	PMID:24668807
Biological Process	GO:0016121	carotene catabolic process	Bco1	IDA		Mouse	MGI:MGI:1931377|PMID:11092891
Biological Process	GO:0016121	carotene catabolic process	Bco1	IMP		Mouse	MGI:MGI:3587559|PMID:15951442
Biological Process	GO:0001754	eye photoreceptor cell differentiation	bco1	IMP	ZFIN:ZDB-MRPHLNO-050715-1,ZFIN:ZDB-MRPHLNO-050715-2	Zfish	PMID:15654843
Biological Process	GO:0030902	hindbrain development	bco1	IMP		Zfish	PMID:12668631
Biological Process	GO:0042574	retinal metabolic process	BCO1	IDA		Human	PMID:11401432
Biological Process	GO:0042574	retinal metabolic process	BCO1	IMP		Human	PMID:17951468
Biological Process	GO:0042574	retinal metabolic process	BCO1	IDA		Human	PMID:24668807
Biological Process	GO:0042574	retinal metabolic process	Bco1	IMP		Mouse	MGI:MGI:3587559|PMID:15951442
Biological Process	GO:0042574	retinal metabolic process	Bco1	IGI	MGI:MGI:2177469	Mouse	PMID:25701869
Biological Process	GO:0001523	retinoid metabolic process	BCO1	IDA		Human	PMID:11401432
Biological Process	GO:0001523	retinoid metabolic process	Bco1	IDA		Mouse	MGI:MGI:1931377|PMID:11092891
Biological Process	GO:0001523	retinoid metabolic process	Bco1	IDA		Rat	PMID:12468597|RGD:634627

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern