Comparative GO Graph (mouse, human, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes ARID4B
  • Mouse genes Arid4b
  • Rat genes Arid4b
  • Zfish genes arid4b,tomm20a
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Arid4b

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0005515	protein binding	ARID4B	IPI	UniProtKB:P14921	Human	PMID:20195357
Molecular Function	GO:0005515	protein binding	Arid4b	IPI	UniProtKB:P70278	Mouse	MGI:MGI:5487499|PMID:22674187
Molecular Function	GO:0005515	protein binding	Arid4b	IPI	UniProtKB:P29374	Mouse	PMID:17043311
Cellular Component	GO:0005829	cytosol	ARID4B	IDA		Human	GO_REF:0000052
Cellular Component	GO:0005739	mitochondrion	ARID4B	IDA		Human	GO_REF:0000052
Cellular Component	GO:0005654	nucleoplasm	ARID4B	IDA		Human	GO_REF:0000052
Biological Process	GO:0006325	chromatin organization	Arid4b	IGI	MGI:MGI:2444354	Mouse	PMID:17043311
Biological Process	GO:0006306	DNA methylation	Arid4b	IGI	MGI:MGI:2444354	Mouse	PMID:17043311
Biological Process	GO:0097368	establishment of Sertoli cell barrier	Arid4b	IGI	MGI:MGI:2444354	Mouse	PMID:23487765
Biological Process	GO:0045944	positive regulation of transcription by RNA polymerase II	Arid4b	IGI	MGI:MGI:97874	Mouse	PMID:23487765
Biological Process	GO:0045944	positive regulation of transcription by RNA polymerase II	Arid4b	IGI	MGI:MGI:88064	Mouse	PMID:23487765
Biological Process	GO:0006349	regulation of gene expression by genomic imprinting	Arid4b	IGI	MGI:MGI:2444354	Mouse	PMID:17043311
Biological Process	GO:0007283	spermatogenesis	Arid4b	IGI	MGI:MGI:2444354	Mouse	PMID:23487765
Biological Process	GO:0006366	transcription by RNA polymerase II	Arid4b	IGI	MGI:MGI:97874	Mouse	PMID:23487765
Biological Process	GO:0006366	transcription by RNA polymerase II	Arid4b	IGI	MGI:MGI:88064	Mouse	PMID:23487765

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern