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Gene Expression Data
Assay Details
Assay
Reference: J:171421 Vandunk C, et al., Development, maturation, and necessity of transcription factors in the mouse suprachiasmatic nucleus. J Neurosci. 2011 Apr 27;31(17):6457-67
Assay type: RNA in situ
MGI Accession ID: MGI:7661039
Gene symbol: Shh
Gene name: sonic hedgehog
Probe: Shh probe
Probe preparation: Antisense labelled with digoxigenin RNA
Visualized with: Alkaline phosphatase
Results
Specimen 6C E10.5: embryonic day 10.5 (more )
Structure Level Pattern Image Note
TS17: diencephalon Present Regionally restricted 6C E10.5 SHH At E10.5 expression demarcated the ventral expression of Six3, Rax, and Fzd5. Regions lateral to the ventricle expressed Shh, although it remained absent from the most ventral medial region at the base of the third ventricle.
Specimen 6C E11.5: embryonic day 11.5 (more )
Structure Level Pattern Image Note
TS19: diencephalon floor plate Ambiguous 6C E11.5 SHH Expression was not detected in the suprachiasmatic nucleus progenitor region.
Specimen 6C E12.5: embryonic day 12.5 (more )
Structure Level Pattern Image Note
TS20: diencephalon floor plate Ambiguous Regionally restricted 6C E12.5 SHH Expression was not detected in the suprachiasmatic nucleus progenitor region.
Specimen 6C E13.5: embryonic day 13.5 (more )
Structure Level Pattern Image Note
TS21: diencephalon floor plate Ambiguous Regionally restricted 6C E13.5 SHH Expression was not detected in the suprachiasmatic nucleus progenitor region.
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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03/18/2025
MGI 6.24 		The Jackson Laboratory