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Gene Expression Data
Assay Details
Assay
Reference: J:63171 Niclou SP, et al., Slit2 is a repellent for retinal ganglion cell axons. J Neurosci. 2000 Jul 1;20(13):4962-74
Assay type: RNA in situ
MGI Accession ID: MGI:7623154
Gene symbol: Slit2
Gene name: slit guidance ligand 2
Probe: Slit2 cDNA
Probe preparation: Antisense labelled with digoxigenin RNA
Visualized with: Alkaline phosphatase
Results
Specimen 6c: embryonic day 13.5 (more )
Structure Level Pattern Image Note
TS21: lens Present 6c
TS21: optic nerve Present 6c
TS21: optic stalk Present 6c
TS21: retina ganglion cell layer Present 6c
TS21: retina Present Regionally restricted 6c Expression is in the outer edge of the retina (toward the periphery).

Specimen 6d: embryonic day 16.0 (more )
Structure Level Pattern Image Note
TS24: optic nerve Present 6d
TS24: lens Weak 6d
TS24: retina ganglion cell layer Weak 6d
TS24: olfactory epithelium Absent 6d

Specimen 7a: embryonic day 12.5 (more )
Note: Double labeled: blue - Slit2; red - Nefh (assay MGI:7623158).
Structure Level Pattern Image Note
TS20: optic stalk Present 7c , 7a
TS20: optic nerve Present Regionally restricted 7c , 7a Expression is at the optic nerve head.

Specimen 7d: embryonic day 13.5 (more )
Note: Double labeled: blue - Slit2; red - Nefh (assay MGI:7623158).
Structure Level Pattern Image Note
TS21: optic stalk Present 7f , 7d
TS21: optic nerve Present Regionally restricted 7d , 7f Expression is at the optic nerve head.

Specimen 7g: embryonic day 13.5 (more )
Note: Double labeled: blue - Slit2; red - Nefh (assay MGI:7623158).
Structure Level Pattern Image Note
TS21: optic stalk Present Non-Uniform 7l , 7j , 7g , 7i Expression is most prominent in cells throughout the ventricular lining within the center of the stalk.

Specimen 8a: embryonic day 13.5 (more )
Note: Double labeled: blue - Slit2; red - Nefh (assay MGI:7623158).
Structure Level Pattern Image Note
TS21: hypothalamus Strong Regionally restricted 8c , 8a Expression is in regions anterior to the path that optic fibers take to the midline and is absent from posterior regions at which retinal fibers cross the ventral midline.
TS21: diencephalon Present Regionally restricted 8c , 8a Expression is in the ventral diencephalon but is absent from the path of growing fibers.

Specimen 8d: embryonic day 13.5 (more )
Note: Double labeled: blue - Slit2; red - Nefh (assay MGI:7623158).
Structure Level Pattern Image Note
TS21: hypothalamus Strong Regionally restricted 8f , 8d Expression is high in the ventral midline of the anterior portion of the hypothalamus and is absent further caudally where retinal ganglion cells axons cross the midline in the chiasm.
TS21: diencephalon Present Regionally restricted 8d , 8f Expression is in the ventral diencephalon but is absent from the path of growing fibers.

Specimen 8g: embryonic day 13.5 (more )
Note: Double labeled: blue - Slit2; red - Nefh (assay MGI:7623158).
Structure Level Pattern Image Note
TS21: hypothalamus Strong Regionally restricted 8g , 8i Expression is in regions anterior to the path that optic fibers take to the midline.

Specimen 8j: embryonic day 13.5 (more )
Note: Double labeled: blue - Slit2; red - Nefh (assay MGI:7623158).
Structure Level Pattern Image Note
TS21: hypothalamus Strong Regionally restricted 8j , 8l Expression is high in the ventral midline of the anterior portion of the hypothalamus and is absent further caudally where retinal ganglion cells axons cross the midline in the chiasm.

Specimen not shown: embryonic day 13.5 (more )
Structure Level Pattern Image Note
TS21: optic stalk Present Regionally restricted Expression is at the exit of the eye in dorsal stalk cells, between the pigment epithelial cells and the retinal ganglion cell axons.


Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/25/2025
MGI 6.24
The Jackson Laboratory