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Gene Expression Data
Assay Details
Assay
Reference: J:61391 Scott IC, et al., Spatiotemporal expression patterns of mammalian chordin during postgastrulation embryogenesis and in postnatal brain. Dev Dyn. 2000 Apr;217(4):449-56
Assay type: RNA in situ
MGI Accession ID: MGI:6430431
Gene symbol: Chrd
Gene name: chordin
Probe: Chrd cDNA3
Probe preparation: Antisense labelled with S35 RNA
Results
Specimen 1A: embryonic day 8.5 (more )
Structure Level Pattern Image Note
TS13: notochord Strong 1A

Specimen 1B: embryonic day 10.5 (more )
Structure Level Pattern Image Note
TS17: branchial arch Present 1B
TS17: forebrain Present 1B
TS17: hindbrain Present 1B
TS17: liver Present 1B
TS17: lung Present 1B
TS17: midbrain Present 1B
TS17: neural tube Present 1B
TS17: embryo mesenchyme Weak 1B
TS17: heart Weak 1B
TS17: limb Weak 1B

Specimen 1C: embryonic day 11.5 (more )
Structure Level Pattern Image Note
TS19: branchial arch Present 1C
TS19: forebrain Present 1C
TS19: hindbrain Present 1C
TS19: liver Present 1C
TS19: lung Present 1C
TS19: midbrain Present 1C
TS19: neural tube Present 1C
TS19: vertebral cartilage condensation Present 1C
TS19: embryo mesenchyme Weak 1C
TS19: heart Weak 1C
TS19: limb Weak 1C

Specimen 1D: embryonic day 12.5 (more )
Structure Level Pattern Image Note
TS20: spinal cord marginal layer Present 1D
TS20: vertebral cartilage condensation Present 1D
TS20: tongue Present Regionally restricted 1D Expression is in the dorsal regions.
TS20: embryo mesenchyme Weak 1D

Specimen 1E: embryonic day 13.5 (more )
Structure Level Pattern Image Note
TS21: forebrain Present 1E
TS21: axial skeleton tail region Present Regionally restricted 1E Expression is in the perichondria surrounding vertebral elements of the tail.
TS21: rib cartilage condensation Weak Regionally restricted 1E Expression is in the perichondria of the ribs.
TS21: femur cartilage condensation Weak Regionally restricted 1E Expression is in the perichondria of the femoral head.
TS21: perichondrium Present Regionally restricted 1E Expression is in the perichondria surrounding vertebral elements of the tail and is weak in the perichondria of the ribs and in the perichondria of the femoral head.
TS21: embryo mesenchyme Weak 1E
TS21: heart ventricle wall Weak 1E
TS21: liver Weak 1E
TS21: lung Weak 1E
TS21: metanephros Weak 1E

Specimen 1F: embryonic day 15.5 (more )
Structure Level Pattern Image Note
TS23: hindlimb skeleton Strong 1F
TS23: perichondrium Strong Regionally restricted 1F Expression is in the perichondria of the tarsals, metatarsals, phalanges, femur, vertebrae, ribs, basioccipital, and basisphenoid bones.
TS23: femur Strong Regionally restricted 1F Expression is in the perichondria.
TS23: hindlimb phalanx Strong Regionally restricted 1F Expression is in the perichondria.
TS23: metatarsus Strong Regionally restricted 1F Expression is in the perichondria.
TS23: tarsal bone Strong Regionally restricted 1F Expression is in the perichondria.
TS23: cerebellum Strong Regionally restricted 1F Expression is in the neuroepithelium.
TS23: forebrain Strong Regionally restricted 1F Expression is in the neuroepithelium.
TS23: midbrain Strong Regionally restricted 1F Expression is in the neuroepithelium.
TS23: spinal cord mantle layer Strong Regionally restricted 1F Expression is in the neuroepithelium.
TS23: basioccipital bone Present Regionally restricted 1F Expression is in the perichondrium/periosteum.
TS23: basisphenoid bone Present Regionally restricted 1F Expression is in the perichondrium/periosteum.
TS23: rib Present Regionally restricted 1F Expression is in the perichondrium/periosteum.
TS23: vertebra Present Regionally restricted 1F Expression is in the perichondrium/periosteum.
TS23: periosteum Present Regionally restricted 1F Expression is in the periosteum of the vertebrae, ribs, basioccipital, and basisphenoid bones.
TS23: gut mucosa Present 1F
TS23: liver Present 1F
TS23: metanephros Present 1F
TS23: submandibular gland Present 1F
TS23: thymus primordium Present 1F
TS23: tongue Present 1F
TS23: vibrissa follicle Present 1F
TS23: embryo mesenchyme Weak 1F

Specimen 2A: embryonic day 10.5 (more )
Structure Level Pattern Image Note
TS17: hindlimb bud Weak 2A

Specimen 2B: embryonic day 13.5 (more )
Structure Level Pattern Image Note
TS21: hindlimb Weak Regionally restricted 2B Expression is in condensing mesenchyme at the distal tips of the digits.
TS21: hindlimb digit mesenchyme Weak Regionally restricted 2B Expression is in condensing mesenchyme at the distal tips of the digits.

Specimen 2C: embryonic day 15.5 (more )
Structure Level Pattern Image Note
TS23: hindlimb skeleton Strong 2C
TS23: perichondrium Strong Regionally restricted 2C Expression is in the perichondria of the tarsals, metatarsals, phalanges, and femur.
TS23: hindlimb phalanx Strong Regionally restricted 2C Expression is in the perichondria.
TS23: metatarsus Strong Regionally restricted 2C Expression is in the perichondria.
TS23: tarsal bone Strong Regionally restricted 2C Expression is in the perichondria.
TS23: hindlimb digit Strong Regionally restricted 2C Exression is at the tips.
TS23: hindlimb digit 1 interphalangeal joint Strong Regionally restricted 2C Expression is in the joint-forming cavities of each digit.
TS23: hindlimb digit 2 interphalangeal joint Strong Regionally restricted 2C Expression is in the joint-forming cavities of each digit.
TS23: hindlimb digit 3 interphalangeal joint Strong Regionally restricted 2C Expression is in the joint-forming cavities of each digit.
TS23: hindlimb digit 4 interphalangeal joint Strong Regionally restricted 2C Expression is in the joint-forming cavities of each digit.
TS23: hindlimb digit 5 interphalangeal joint Strong Regionally restricted 2C Expression is in the joint-forming cavities of each digit.

Specimen 2D: embryonic day 15.5 (more )
Structure Level Pattern Image Note
TS23: lung Present Regionally restricted 2D Expression is in the mesoderm surrounding the major bronchi and trachea.

Specimen 2E: embryonic day 15.5 (more )
Structure Level Pattern Image Note
TS23: submandibular gland Present 2E
TS23: thymus primordium Present 2E
TS23: tongue Present 2E
TS23: trachea Present 2E
TS23: perichondrium Present Regionally restricted 2E Expression is in the perichondrium/periosteum of the vertebrae, ribs, basioccipital, and basisphenoid bones.
TS23: periosteum Present Regionally restricted 2E Expression is in the perichondrium/periosteum of the vertebrae, ribs, basioccipital, and basisphenoid bones.
TS23: vertebra Present Regionally restricted 2E Expression is in the perichondrium/periosteum of the vertebrae.
TS23: rib Present Regionally restricted 2E Expression is in the perichondrium/periosteum of the ribs.
TS23: basioccipital bone Present Regionally restricted 2E Expression is in the perichondrium/periosteum of the basioccipital bone.
TS23: basisphenoid bone Present Regionally restricted 2E Expression is in the perichondrium/periosteum of the basisphenoid bone.

Specimen 3A: postnatal day 21 (more )
Structure Level Pattern Image Note
TS28: cerebellum granule cell layer Strong 3A
TS28: dentate gyrus Strong 3A
TS28: hippocampus CA1 Strong 3A
TS28: hippocampus CA2 Strong 3A
TS28: hippocampus CA3 Strong 3A
TS28: cerebral cortex Weak 3A
TS28: inferior colliculus Weak 3A
TS28: superior colliculus Weak 3A

Specimen not shown: embryonic day 9.5 (more )
Structure Level Pattern Image Note
TS15: embryo Trace


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Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
05/21/2024
MGI 6.23
The Jackson Laboratory