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Gene Expression Data
Assay Details
Assay
Reference: J:171409 GUDMAP Consortium, GUDMAP: the GenitoUrinary Development Molecular Anatomy Project. www.gudmap.org. 2004;
Assay type: RNA in situ
MGI Accession ID: MGI:5540708
Gene symbol: Tgfb1i1
Gene name: transforming growth factor beta 1 induced transcript 1
Probe: RIKEN clone A530093G23 subclone
Probe preparation: Antisense labelled with digoxigenin RNA
Visualized with: Alkaline phosphatase
Results
Specimen GUDMAP:10015: embryonic day 10.5 (more )
Note: Labeling was visualized using NBT/BCIP.
Structure Level Pattern Image Note
TS17: genitourinary system Present GUDMAP:10015
TS17: genitourinary system mesenchyme Present GUDMAP:10015
TS17: mesonephros Present Regionally restricted GUDMAP:10015
TS17: mesonephros mesenchyme Present GUDMAP:10015
TS17: mesonephric tubule Absent GUDMAP:10015
TS17: nephric duct, mesonephric portion Absent GUDMAP:10015
TS17: metanephric mesenchyme Absent GUDMAP:10015
TS17: nephric duct, metanephric portion Absent GUDMAP:10015
TS17: developing vasculature of genitourinary system Present GUDMAP:10015
Specimen GUDMAP:10350: embryonic day 13.5 (more )
Note: Labeling was visualized using NBT/BCIP.
Structure Level Pattern Image Note
TS21: male reproductive system Present GUDMAP:10350
TS21: mesonephros of male Present Regionally restricted GUDMAP:10350
TS21: mesonephric mesenchyme of male Present GUDMAP:10350 a thin line of expression can be seen between the paramesonephric duct and the nephric duct
TS21: mesonephric tubule of male Absent GUDMAP:10350
TS21: coelomic epithelium of male mesonephros Absent GUDMAP:10350
TS21: primary sex cord Absent GUDMAP:10350
TS21: coelomic epithelium of testis Ambiguous GUDMAP:10350 uncertain expression
TS21: interstitium of the testis Ambiguous GUDMAP:10350 possible expression
TS21: developing vasculature of testis Ambiguous GUDMAP:10350 uncertain expression
Specimen GUDMAP:10351: embryonic day 13.5 (more )
Note: Labeling was visualized using NBT/BCIP. Male and female were examined; only the male is shown. Annotators reported the male expression pattern in the metanephros is identical to female.
Structure Level Pattern Image Note
TS21: urinary system Present GUDMAP:10351
TS21: metanephros Present Regionally restricted GUDMAP:10351
TS21: renal interstitium Present GUDMAP:10351
TS21: renal capsule Absent GUDMAP:10351
TS21: cap mesenchyme Absent GUDMAP:10351
TS21: pretubular aggregate Absent GUDMAP:10351
TS21: ureteric tip Absent GUDMAP:10351
TS21: ureter Ambiguous GUDMAP:10351 uncertain expression
Specimen GUDMAP:10352: embryonic day 13.5 (more )
Note: Labeling was visualized using NBT/BCIP. Male and female were examined; only the male is shown. Annotators reported the male expression pattern in the urogenital sinus is identical to female.
Structure Level Pattern Image Note
TS21: urinary system Present GUDMAP:10352
TS21: urogenital sinus Present Regionally restricted GUDMAP:10352
TS21: primitive bladder Present GUDMAP:10352 very strong expression
TS21: ureter Ambiguous GUDMAP:10352 uncertain expression
Specimen GUDMAP:10353: embryonic day 13.5 (more )
Note: Labeling was visualized using NBT/BCIP.
Structure Level Pattern Image Note
TS21: female reproductive system Present GUDMAP:10353
TS21: mesonephros of female Present Regionally restricted GUDMAP:10353
TS21: mesonephric mesenchyme of female Present GUDMAP:10353
TS21: ovary Present GUDMAP:10353
TS21: coelomic epithelium of female mesonephros Absent GUDMAP:10353
TS21: nephric duct of female, rest of Absent GUDMAP:10353
TS21: paramesonephric duct of female, rest of Absent GUDMAP:10353
TS21: paramesonephric duct of female, mesonephric portion Absent GUDMAP:10353
Specimen GUDMAP:10771: embryonic day 15.5 (more )
Note: Labeling was visualized using BM purple. The low level expression control (Shh) probe's color developed for 140 hrs, but no expression was detected. Thus, it is possible that very weak levels of gene expression were not detectable in this experiment.
Structure Level Pattern Image Note
TS23: metanephros Absent GUDMAP:10771
TS23: ureter Absent GUDMAP:10771
Specimen GUDMAP:10772: embryonic day 15.5 (more )
Note: Labeling was visualized using BM purple. The low level expression control (Shh) probe's color developed for 140 hrs, but no expression was detected. Thus, it is possible that very weak levels of gene expression were not detectable in this experiment.
Structure Level Pattern Image Note
TS23: ureter Absent GUDMAP:10772
Specimen GUDMAP:11320: embryonic day 15.5 (more )
Note: Labeling was visualized using BM purple.
Structure Level Pattern Image Note
TS23: urinary system Present GUDMAP:11320
TS23: metanephros Present GUDMAP:11320
TS23: nephrogenic zone Present GUDMAP:11320
TS23: nephrogenic interstitium Present GUDMAP:11320
TS23: renal cortex Present GUDMAP:11320
TS23: capillary loop renal corpuscle Present GUDMAP:11320
TS23: presumptive mesangium of capillary loop renal corpuscle Present GUDMAP:11320
TS23: maturing renal corpuscle Present GUDMAP:11320
TS23: maturing glomerular tuft Present GUDMAP:11320
TS23: glomerular mesangium of maturing glomerular tuft Present GUDMAP:11320
TS23: renal cortical interstitium Present GUDMAP:11320
TS23: renal cortical vasculature Present GUDMAP:11320
TS23: renal cortical arterial system Present GUDMAP:11320
TS23: renal medulla Present GUDMAP:11320
TS23: renal medullary interstitium Present GUDMAP:11320
TS23: renal pelvis Present GUDMAP:11320
TS23: pelvic smooth muscle Present GUDMAP:11320
TS23: perihilar interstitium Present GUDMAP:11320
TS23: developing capillary loop stage nephron group Present GUDMAP:11320
TS23: maturing nephron Present GUDMAP:11320
TS23: renal interstitium Present GUDMAP:11320
TS23: renal vasculature Present GUDMAP:11320
TS23: renal artery Present GUDMAP:11320
TS23: renal vein Present GUDMAP:11320
TS23: renal capsule Absent GUDMAP:11320
TS23: cap mesenchyme Absent GUDMAP:11320
TS23: pretubular aggregate Absent GUDMAP:11320
TS23: ureteric tip Absent GUDMAP:11320
TS23: ureteric tree terminal branch excluding tip itself Absent GUDMAP:11320
TS23: renal vesicle Absent GUDMAP:11320
TS23: comma-shaped body Absent GUDMAP:11320
TS23: s-shaped body Absent GUDMAP:11320
TS23: parietal epithelium of capillary loop renal corpuscle Absent GUDMAP:11320
TS23: presumptive endothelium of capillary loop renal corpuscle Absent GUDMAP:11320
TS23: associated interstitium of capillary loop renal corpuscle Absent GUDMAP:11320
TS23: glomerular capillary system of maturing glomerular tuft Absent GUDMAP:11320
TS23: glomerular basement membrane of maturing renal corpuscle Absent GUDMAP:11320
TS23: visceral epithelium of maturing renal corpuscle Absent GUDMAP:11320
TS23: Bowman's capsule of maturing renal corpuscle Absent GUDMAP:11320
TS23: parietal epithelium of maturing renal corpuscle Absent GUDMAP:11320
TS23: glomerular mesangium of maturing renal corpuscle Absent GUDMAP:11320
TS23: cortical renal tubule Absent GUDMAP:11320
TS23: cortical collecting duct Absent GUDMAP:11320
TS23: renal cortical venous system Absent GUDMAP:11320
TS23: renal cortical capillary Absent GUDMAP:11320
TS23: immature loop of Henle Absent GUDMAP:11320
TS23: renal medullary vasculature Absent GUDMAP:11320
TS23: medullary collecting duct Absent GUDMAP:11320
TS23: pelvic urothelial lining Absent GUDMAP:11320
TS23: collecting duct Absent GUDMAP:11320
TS23: early nephron Absent GUDMAP:11320
Specimen GUDMAP:11321: embryonic day 15.5 (more )
Note: Labeling was visualized using BM purple.
Structure Level Pattern Image Note
TS23: ureter Present GUDMAP:11321
TS23: ureteral mesenchyme Present GUDMAP:11321
TS23: ureteral smooth muscle layer Present GUDMAP:11321
TS23: urothelium of ureter Absent GUDMAP:11321
TS23: ureteral mesenchyme outer layer Absent GUDMAP:11321
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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03/18/2025
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