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Gene Expression Data
Assay Details
Assay
Reference: J:174483 Cooper MA, et al., Distribution of EphA5 receptor protein in the developing and adult mouse nervous system. J Comp Neurol. 2009 Jun 1;514(4):310-28
Assay type: In situ reporter (knock in)
MGI Accession ID: MGI:5518575
Gene symbol: Epha5
Gene name: Eph receptor A5
Reporter: lacZ
Direct Detection
Assay notes: Fixative for whole mounts and paraffin embedded specimens the was 2% paraformaldehyde/0.5% glutaraldehyde. For older animals ages E17, P0, P6, 1 month, and 3 months, brains were dissected and fresh frozen and postfixed in the same fixative.
Results
Specimen 2E: embryonic day 17.0; Epha5tm1Jgf/Epha5+ (more )
Structure Level Pattern Image Note
TS25: brain Present 2E

Specimen 2G: postnatal adult; Epha5tm1Jgf/Epha5+ (more )
Structure Level Pattern Image Note
TS28: brain Present 2G

Specimen 3A: embryonic day 9.0; Epha5tm1Jgf/Epha5+ (more )
Structure Level Pattern Image Note
TS14: future midbrain roof plate Present Regionally restricted 3A Expression is in the roof of the anterior mesencephalon.
TS14: optic vesicle Present 3A
TS14: somite Present 3A
TS14: embryo Present Regionally restricted 3A Expression is at the caudal tip.
TS14: future hindbrain Weak 3A
TS14: prosencephalon Absent 3A
TS14: visceral organ system Absent 3A

Specimen 3B: embryonic day 11.0; Epha5tm1Jgf/Epha5+ (more )
Structure Level Pattern Image Note
TS18: telencephalon Present Regionally restricted 3B Expression is in the lateral ganglionic eminence, primarily along the neuroepithelium. Absent in the medial ganglionic eminence and neocortex.
TS18: cranial nerve Moderate Regionally restricted 3B Expression is in the semilunar ganglion of cranial nerve V.
TS18: midbrain Present Regionally restricted 3B Expression is in the pretectal area, the anterior ventral tegmentum, and the tectum.
TS18: metencephalon Moderate Regionally restricted 3B Expression is in the pons and cerebellar plate.
TS18: acoustic ganglion Present 3B
TS18: spinal ganglion Present 3B
TS18: trigeminal ganglion Present 3B
TS18: vagus ganglion Present 3B
TS18: future spinal cord Present Regionally restricted 3B Expression is ventral.
TS18: limb Absent 3B
TS18: visceral organ system Absent 3B

Specimen 3C: embryonic day 13.0; Epha5tm1Jgf/Epha5+ (more )
Structure Level Pattern Image Note
TS21: cerebellum Strong 3C
TS21: trigeminal ganglion Strong 3C
TS21: vagus ganglion Strong 3C
TS21: forelimb Present Regionally restricted 3C Expression is in isolated patches.
TS21: hindlimb Present Regionally restricted 3C Expression is in isolated patches.
TS21: cardiovascular system Absent 3C
TS21: visceral organ system Absent 3C

Specimen 3D: embryonic day 15.0; Epha5tm1Jgf/Epha5+ (more )
Structure Level Pattern Image Note
TS23: cerebral cortex Strong 3D
TS23: spinal cord Present Regionally restricted 3D Expression is ventral.
TS23: forelimb Present 3D
TS23: hindlimb Present 3D
TS23: spinal ganglion Present 3D

Specimen 4A: embryonic day 9.0; Epha5tm1Jgf/Epha5+ (more )
Structure Level Pattern Image Note
TS14: cardiovascular system Absent 4A
TS14: prosencephalon Absent 4A
TS14: visceral organ system Absent 4A

Specimen 4B: embryonic day 9.0; Epha5tm1Jgf/Epha5+ (more )
Structure Level Pattern Image Note
TS14: cardiovascular system Absent 4B
TS14: prosencephalon Absent 4B
TS14: visceral organ system Absent 4B

Specimen 4C: embryonic day 9.0; Epha5tm1Jgf/Epha5+ (more )
Structure Level Pattern Image Note
TS14: future midbrain roof plate Present Regionally restricted 4C Expression is in the roof of the anterior mesencephalon.
TS14: cardiovascular system Absent 4C
TS14: prosencephalon Absent 4C
TS14: visceral organ system Absent 4C

Specimen 4D: embryonic day 9.0; Epha5tm1Jgf/Epha5+ (more )
Structure Level Pattern Image Note
TS14: future hindbrain Weak 4D

Specimen 5A: embryonic day 11.0; Epha5tm1Jgf/Epha5+ (more )
Structure Level Pattern Image Note
TS18: telencephalon Present Regionally restricted 5A Expression is in the lateral ganglionic eminence, primarily along the neuroepithelium. Absent in the medial ganglionic eminence and neocortex.
TS18: future spinal cord Present Regionally restricted 5A Expression is ventral.
TS18: spinal ganglion Present 5A

Specimen 5B: embryonic day 11.0; Epha5tm1Jgf/Epha5+ (more )
Structure Level Pattern Image Note
TS18: telencephalon Present Regionally restricted 5B Expression is in the lateral ganglionic eminence, primarily along the neuroepithelium. Absent in the medial ganglionic eminence and neocortex.
TS18: midbrain Present Regionally restricted 5B Expression is in the pretectal area, the anterior ventral tegmentum, and the tectum.
TS18: future spinal cord Present Regionally restricted 5B Expression is ventral.
TS18: spinal ganglion Present 5B

Specimen 5C: embryonic day 11.0; Epha5tm1Jgf/Epha5+ (more )
Structure Level Pattern Image Note
TS18: eye Strong Graded 5C There is a temporal to nasal gradient of expression in the optic cup.
TS18: diencephalon Weak Regionally restricted 5C Expression is dorsally in the primordial thalamus.
TS18: midbrain Present Regionally restricted 5C Expression is in the pretectal area, the anterior ventral tegmentum, and the tectum.
TS18: future spinal cord Present Regionally restricted 5C Expression is ventral.
TS18: spinal ganglion Present 5C

Specimen 5D: embryonic day 11.0; Epha5tm1Jgf/Epha5+ (more )
Structure Level Pattern Image Note
TS18: metencephalon Moderate Regionally restricted 5D Expression is in the pons and cerebellar plate.
TS18: acoustic ganglion Present 5D
TS18: spinal ganglion Present 5D
TS18: trigeminal ganglion Present 5D
TS18: vagus ganglion Present 5D
TS18: future spinal cord Present Regionally restricted 5D Expression is ventral.
TS18: limb Absent 5D
TS18: visceral organ system Absent 5D

Specimen 5E: embryonic day 11.0; Epha5tm1Jgf/Epha5+ (more )
Structure Level Pattern Image Note
TS18: metencephalon Moderate Regionally restricted 5E Expression is in the pons and cerebellar plate.
TS18: acoustic ganglion Present 5E
TS18: spinal ganglion Present 5E
TS18: trigeminal ganglion Present 5E
TS18: vagus ganglion Present 5E
TS18: future spinal cord Present Regionally restricted 5E Expression is ventral.
TS18: limb Absent 5E
TS18: visceral organ system Absent 5E

Specimen 5F: embryonic day 11.0; Epha5tm1Jgf/Epha5+ (more )
Structure Level Pattern Image Note
TS18: telencephalon Present Regionally restricted 5F Expression is in the lateral ganglionic eminence, primarily along the neuroepithelium. Absent in the medial ganglionic eminence and neocortex.
TS18: cranial nerve Moderate Regionally restricted 5F Expression is in the semilunar ganglion of cranial nerve V.
TS18: midbrain Present Regionally restricted 5F Expression is in the pretectal area, the anterior ventral tegmentum, and the tectum.
TS18: metencephalon Moderate Regionally restricted 5F Expression is in the pons and cerebellar plate.
TS18: acoustic ganglion Present 5F
TS18: spinal ganglion Present 5F
TS18: trigeminal ganglion Present 5F
TS18: vagus ganglion Present 5F
TS18: future spinal cord Present Regionally restricted 5F Expression is ventral.

Specimen 5G: embryonic day 11.0; Epha5tm1Jgf/Epha5+ (more )
Structure Level Pattern Image Note
TS18: eye Strong Graded 5G There is a temporal to nasal gradient of expression in the optic cup.

Specimen 6A: embryonic day 13.0; Epha5tm1Jgf/Epha5+ (more )
Structure Level Pattern Image Note
TS21: cerebral cortex Strong 6A

Specimen 6B: embryonic day 13.0; Epha5tm1Jgf/Epha5+ (more )
Structure Level Pattern Image Note
TS21: cerebral cortex Strong 6B
TS21: olfactory lobe Present 6B

Specimen 6C: embryonic day 13.0; Epha5tm1Jgf/Epha5+ (more )
Structure Level Pattern Image Note
TS21: cerebral cortex Strong 6C
TS21: telencephalon Present Regionally restricted 6C Expression is in the hippocampus.
TS21: lateral ganglionic eminence Present 6C
TS21: thalamus Absent 6C

Specimen 6D: embryonic day 13.0; Epha5tm1Jgf/Epha5+ (more )
Structure Level Pattern Image Note
TS21: cerebral cortex Strong 6D
TS21: telencephalon Present Regionally restricted 6D Expression is in the hippocampus. Absent in amygdala.
TS21: lateral ganglionic eminence Present 6D
TS21: midbrain Strong Regionally restricted 6D Expression is in the pretectum and superior colliculus.

Specimen 6E: embryonic day 13.0; Epha5tm1Jgf/Epha5+ (more )
Structure Level Pattern Image Note
TS21: cerebellum Strong 6E
TS21: trigeminal ganglion Strong 6E

Specimen 6F: embryonic day 13.0; Epha5tm1Jgf/Epha5+ (more )
Structure Level Pattern Image Note
TS21: hypoglossal nerve Strong 6F

Specimen 7A: embryonic day 15.0; Epha5tm1Jgf/Epha5+ (more )
Structure Level Pattern Image Note
TS23: cerebral cortex Strong 7A

Specimen 7B: embryonic day 15.0; Epha5tm1Jgf/Epha5+ (more )
Structure Level Pattern Image Note
TS23: lateral ganglionic eminence Present 7B
TS23: medial ganglionic eminence Absent 7B

Specimen 7C: embryonic day 15.0; Epha5tm1Jgf/Epha5+ (more )
Structure Level Pattern Image Note
TS23: cerebral cortex Present 7C

Specimen 7D: embryonic day 15.0; Epha5tm1Jgf/Epha5+ (more )
Structure Level Pattern Image Note
TS23: pretectum Strong 7D
TS23: tectum Strong 7D

Specimen 7E: embryonic day 15.0; Epha5tm1Jgf/Epha5+ (more )
Structure Level Pattern Image Note
TS23: cerebellum Present 7E
TS23: vestibulocochlear nerve Present 7E

Specimen 7F: embryonic day 15.0; Epha5tm1Jgf/Epha5+ (more )
Structure Level Pattern Image Note
TS23: hypoglossal nerve Present 7F

Specimen 8A: embryonic day 15.0; Epha5tm1Jgf/Epha5+ (more )
Structure Level Pattern Image Note
TS23: cerebral cortex Present 8A

Specimen 8B: embryonic day 15.0; Epha5tm1Jgf/Epha5+ (more )
Structure Level Pattern Image Note
TS23: cerebral cortex Present 8B

Specimen 8C: embryonic day 15.0; Epha5tm1Jgf/Epha5+ (more )
Structure Level Pattern Image Note
TS23: lateral ganglionic eminence Present 8C
TS23: medial ganglionic eminence Absent 8C
TS23: hippocampus Present 8C
TS23: spinal cord Present Regionally restricted 8C Expression is ventral.

Specimen 8D: embryonic day 15.0; Epha5tm1Jgf/Epha5+ (more )
Structure Level Pattern Image Note
TS23: pretectum Strong 8D
TS23: tectum Strong 8D
TS23: glans of male genital tubercle Strong Regionally restricted 8D Expression is in the ventral glans penis.
TS23: epithalamus Present 8D
TS23: hippocampus Present 8D
TS23: spinal ganglion Present 8D
TS23: thalamus Trace Regionally restricted 8D Expression in the thalamic nuclei were either negative or weak.

Specimen 9A: embryonic day 17.0; Epha5tm1Jgf/Epha5+ (more )
Structure Level Pattern Image Note
TS25: cerebral cortex Strong 9A
TS25: cortical subplate Present 9A
TS25: main olfactory bulb Present 9A
TS25: piriform cortex Present 9A
TS25: eye Present Graded 9A Expression is in a temporonasal gradient.
TS25: neural retina Present Regionally restricted 9A Expression is in the retinal ganglion cell layer.
TS25: telencephalon Present Regionally restricted 9A Expression is in the claustrum.

Specimen 9B: embryonic day 17.0; Epha5tm1Jgf/Epha5+ (more )
Structure Level Pattern Image Note
TS25: cerebral cortex Strong 9B
TS25: cortical subplate Present 9B
TS25: piriform cortex Present 9B
TS25: telencephalon Present Regionally restricted 9B Expression is in the induseum griseum and the claustrum.
TS25: corpus striatum Weak 9B
TS25: telencephalon septum Weak 9B

Specimen 9C: embryonic day 17.0; Epha5tm1Jgf/Epha5+ (more )
Structure Level Pattern Image Note
TS25: cerebral cortex Strong 9C
TS25: hippocampus Present Graded 9C Expression is in a decreasing gradient from the medial to the lateral areas.
TS25: thalamus Present Regionally restricted 9C Expression is in the nucleus reuniens and several dorsal thalamic nuclear groups.
TS25: epithalamus Present 9C
TS25: hypothalamus Weak 9C

Specimen 9D: embryonic day 17.0; Epha5tm1Jgf/Epha5+ (more )
Structure Level Pattern Image Note
TS25: cerebral cortex Strong 9D
TS25: hippocampus Present Graded 9D Expression is in a decreasing gradient from the medial to the lateral areas.
TS25: thalamus Present Regionally restricted 9D Expression is in the nucleus reuniens and several dorsal thalamic nuclear groups.
TS25: epithalamus Present 9D
TS25: hypothalamus Weak

Specimen 9E: embryonic day 17.0; Epha5tm1Jgf/Epha5+ (more )
Structure Level Pattern Image Note
TS25: cerebral cortex Strong 9E
TS25: hippocampus Present Graded 9E Expression is in a decreasing gradient from the medial to the lateral areas.
TS25: pretectum Weak 9E
TS25: superior colliculus Weak 9E

Specimen 9F: embryonic day 17.0; Epha5tm1Jgf/Epha5+ (more )
Structure Level Pattern Image Note
TS25: cerebral cortex Strong 9F
TS25: pretectum Weak 9F
TS25: superior colliculus Weak 9F

Specimen 10A: postnatal day 0; Epha5tm1Jgf/Epha5+ (more )
Structure Level Pattern Image Note
TS27: main olfactory bulb glomerular layer Present 10A
TS27: main olfactory bulb mitral cell layer Present 10A

Specimen 10B: postnatal day 0; Epha5tm1Jgf/Epha5+ (more )
Structure Level Pattern Image Note
TS27: indusium griseum Very strong 10B
TS27: piriform cortex Strong 10B
TS27: lateral septal complex Moderate 10B
TS27: insular cortex Present 10B
TS27: parietal cortex Present 10B
TS27: basal ganglia Weak 10B
TS27: cingulate cortex Weak 10B
TS27: frontal cortex Weak 10B

Specimen 10C: postnatal day 0; Epha5tm1Jgf/Epha5+ (more )
Structure Level Pattern Image Note
TS27: indusium griseum Very strong 10C
TS27: anterior thalamic group Present 10C
TS27: intralaminar thalamic group Present 10C
TS27: lateral thalamic group Present 10C
TS27: nucleus reuniens Present 10C
TS27: corpus striatum Present Regionally restricted 10C Absent in the dorsal striatum.
TS27: accumbens nucleus Present 10C There is a discrepancy between the text and the table, Fig 10C states expression is present but table 2 indicates absence of expression.
TS27: hypothalamus Weak 10C
TS27: caudate-putamen Weak 10C There is a discrepancy between the text and the table, Fig 10C states expression is present but table 2 indicates absence of expression.
TS27: globus pallidus Absent 10C

Specimen 10D: postnatal day 0; Epha5tm1Jgf/Epha5+ (more )
Structure Level Pattern Image Note
TS27: hippocampus Strong 10D
TS27: anterior thalamic group Present 10D
TS27: intralaminar thalamic group Present 10D
TS27: lateral thalamic group Present 10D
TS27: nucleus reuniens Present 10D
TS27: hypothalamus Weak 10D
TS27: dentate gyrus Absent 10D There is a discrepancy between the text and the table, Fig 10D,E states expression is abent in the dentate gyrus but table 2 indicates expression.

Specimen 10E: postnatal day 0; Epha5tm1Jgf/Epha5+ (more )
Structure Level Pattern Image Note
TS27: hippocampus Strong 10E
TS27: anterior thalamic group Present 10E
TS27: intralaminar thalamic group Present 10E
TS27: lateral thalamic group Present 10E
TS27: nucleus reuniens Present 10E
TS27: hypothalamus Weak 10E
TS27: dentate gyrus Absent 10E There is a discrepancy between the text and the table, Fig 10D,E states expression is abent in the dentate gyrus but table 2 indicates expression.

Specimen 10F: postnatal day 0; Epha5tm1Jgf/Epha5+ (more )
Structure Level Pattern Image Note
TS27: midbrain Present Regionally restricted 10F Some signals were detected around the ventricle, in the central gray region.
TS27: pretectum Absent 10F
TS27: tectum Absent 10F

Specimen 11A: postnatal day 6; Epha5tm1Jgf/Epha5+ (more )
Structure Level Pattern Image Note
TS28: main olfactory bulb glomerular layer Strong 11A
TS28: main olfactory bulb mitral cell layer Strong 11A

Specimen 11B: postnatal day 6; Epha5tm1Jgf/Epha5+ (more )
Structure Level Pattern Image Note
TS28: insular cortex Strong 11B
TS28: parietal cortex Strong 11B
TS28: piriform cortex Strong 11B
TS28: cingulate cortex Present 11B
TS28: frontal cortex Present 11B

Specimen 11C: postnatal day 6; Epha5tm1Jgf/Epha5+ (more )
Structure Level Pattern Image Note
TS28: insular cortex Strong 11C
TS28: parietal cortex Strong 11C
TS28: cingulate cortex Present 11C
TS28: frontal cortex Present 11C
TS28: caudate-putamen Present Regionally restricted 11C Expression is in the striatal patches.

Specimen 11D: postnatal day 6; Epha5tm1Jgf/Epha5+ (more )
Structure Level Pattern Image Note
TS28: barrel cortex Strong 11D
TS28: hippocampus Strong 11D
TS28: insular cortex Strong 11D
TS28: parietal cortex Strong 11D
TS28: cingulate cortex Present 11D
TS28: frontal cortex Present 11D
TS28: dentate gyrus Present Regionally restricted 11D Expression is as a thin line.
TS28: thalamic nucleus Present Regionally restricted 11D Expression is in various nuclei.

Specimen 11E: postnatal day 6; Epha5tm1Jgf/Epha5+ (more )
Structure Level Pattern Image Note
TS28: cortical layer II Strong 11E
TS28: cortical layer III Strong 11E
TS28: cortical layer V Strong 11E
TS28: hippocampus Strong 11E
TS28: cortical layer I Present 11E
TS28: cortical layer IV Present 11E
TS28: cortical layer VI Present 11E
TS28: dentate gyrus Present Regionally restricted 11E Expression is as a thin line.
TS28: thalamic nucleus Present Regionally restricted 11E Expression is in various nuclei.
TS28: ventral posterior lateral thalamic nucleus Absent 11E
TS28: ventral posterior medial thalamic nucleus Absent 11E

Specimen 11F: postnatal day 6; Epha5tm1Jgf/Epha5+ (more )
Structure Level Pattern Image Note
TS28: pretectum Weak 11F
TS28: substantia nigra Weak 11F
TS28: tectum Weak 11F
TS28: ventral tegmental area Weak 11F
TS28: midbrain Weak 11F Expression is in ventral dopaminergic nuclei.

Specimen 12A: postnatal month 3; Epha5tm1Jgf/Epha5+ (more )
Structure Level Pattern Image Note
TS28: olfactory lobe Present 12A Strongest staining of the anterior nucleus of the olfactory lobes was found in the lateral and ventral lobes.
TS28: claustrum Strong 12A

Specimen 12B: postnatal month 3; Epha5tm1Jgf/Epha5+ (more )
Structure Level Pattern Image Note
TS28: barrel cortex Very strong 12B
TS28: cerebral cortex Strong 12B
TS28: endopiriform nucleus Present 12B
TS28: piriform cortex Present 12B
TS28: olfactory tract Absent 12B
TS28: olfactory tubercle Absent 12B

Specimen 12C: postnatal month 3; Epha5tm1Jgf/Epha5+ (more )
Structure Level Pattern Image Note
TS28: barrel cortex Very strong 12C
TS28: cerebral cortex Strong 12C
TS28: hypothalamic nucleus Strong 12C
TS28: caudate-putamen Moderate 12C Stronger signals were found in the striatal patches.
TS28: habenula Moderate 12C
TS28: globus pallidus Trace 12C Little or no staining.

Specimen 12D: postnatal month 3; Epha5tm1Jgf/Epha5+ (more )
Structure Level Pattern Image Note
TS28: hypothalamic nucleus Strong 12D
TS28: habenula Moderate 12D
TS28: amygdala Present 12D
TS28: dentate gyrus granule cell layer Present 12D
TS28: hypothalamus Present 12D
TS28: nucleus reuniens Present 12D
TS28: zona incerta Present 12D
TS28: thalamic nucleus Present Regionally restricted 12D Expression is in the outer nuclei of the thalamus and in specific dorsal thalamic nuclei.
TS28: dentate gyrus Weak 12D
TS28: cerebellar peduncle Absent 12D

Specimen 12E: postnatal month 3; Epha5tm1Jgf/Epha5+ (more )
Structure Level Pattern Image Note
TS28: cortical amygdaloid nucleus Present 12E
TS28: cerebellar peduncle Absent 12E

Specimen 12F: postnatal month 3; Epha5tm1Jgf/Epha5+ (more )
Structure Level Pattern Image Note
TS28: interpeduncular nucleus Present 12F
TS28: substantia nigra Present 12F
TS28: ventral tegmental area Present 12F
TS28: periaqueductal grey Weak 12F
TS28: pretectum Weak 12F
TS28: superior colliculus Weak 12F
TS28: inferior colliculus Absent 12F
TS28: red nucleus Absent 12F

Specimen 13A: postnatal adult; Epha5tm1Jgf/Epha5+ (more )
Structure Level Pattern Image Note
TS28: barrel cortex Very strong 13A
TS28: cerebral cortex Strong 13A
TS28: amygdala Present 13A
TS28: dentate gyrus granule cell layer Present 13A
TS28: hypothalamus Present 13A
TS28: cerebellum Purkinje cell layer Present Scattered 13A
TS28: dentate gyrus Weak 13A

Specimen 13B: postnatal adult; Epha5tm1Jgf/Epha5+ (more )
Structure Level Pattern Image Note
TS28: barrel cortex Very strong 13B
TS28: cerebral cortex Strong 13B
TS28: amygdala Present 13B
TS28: dentate gyrus granule cell layer Present 13B
TS28: endopiriform nucleus Present 13B
TS28: hypothalamus Present 13B
TS28: piriform cortex Present 13B
TS28: dentate gyrus Weak 13B

Specimen 13C: postnatal adult; Epha5tm1Jgf/Epha5+ (more )
Structure Level Pattern Image Note
TS28: barrel cortex Very strong 13C
TS28: cerebral cortex Strong 13C
TS28: caudate-putamen Moderate 13C Stronger signals were found in the striatal patches.
TS28: amygdala Present 13C
TS28: dentate gyrus granule cell layer Present 13C
TS28: hypothalamus Present 13C
TS28: dentate gyrus Weak 13C
TS28: pons Weak 13C
TS28: globus pallidus Absent 13C
TS28: olfactory tract Absent 13C
TS28: olfactory tubercle Absent 13C

Specimen 13D: postnatal adult; Epha5tm1Jgf/Epha5+ (more )
Structure Level Pattern Image Note
TS28: olfactory cortex Strong Regionally restricted 13D Expression is in the accessory nucleus.
TS28: hypothalamic nucleus Strong 13D
TS28: habenula Moderate 13D
TS28: amygdala Present 13D
TS28: dentate gyrus granule cell layer Present 13D
TS28: hypothalamus Present 13D
TS28: substantia nigra Present 13D
TS28: ventral tegmental area Present 13D
TS28: dentate gyrus Weak 13D
TS28: dorsal thalamus Weak 13D
TS28: periaqueductal grey Weak 13D
TS28: pons Weak 13D
TS28: pretectum Weak 13D
TS28: superior colliculus Weak 13D
TS28: prethalamus Weak 13D Weaker than seen in the dorsal thalamus.
TS28: inferior colliculus Absent 13D

Specimen 14A: postnatal adult; Epha5tm1Jgf/Epha5+ (more )
Structure Level Pattern Image Note
TS28: main olfactory bulb external plexiform layer Strong 14A
TS28: main olfactory bulb glomerular layer Strong 14A
TS28: main olfactory bulb granule cell layer Strong 14A
TS28: main olfactory bulb internal plexiform layer Strong 14A
TS28: main olfactory bulb mitral cell layer Strong 14A

Specimen 14B: postnatal adult; Epha5tm1Jgf/Epha5+ (more )
Structure Level Pattern Image Note
TS28: basolateral amygdaloid nucleus Strong 14B
TS28: basomedial amygdaloid nucleus Strong 14B
TS28: central amygdaloid nucleus Strong 14B
TS28: lateral amygdaloid nucleus Strong 14B

Specimen 14C: postnatal adult; Epha5tm1Jgf/Epha5+ (more )
Structure Level Pattern Image Note
TS28: hippocampus pyramidal cell layer Very strong 14C
TS28: hippocampus stratum oriens Strong 14C Strongest just dorsal to the pyramidal cells.
TS28: hippocampus molecular layer Strong 14C

Specimen Table 1 E9: embryonic day 9.0; Epha5tm1Jgf/Epha5+ (more )
Structure Level Pattern Image Note
TS14: future midbrain Present Regionally restricted Expression is in the pretectum and superior colliculus, absent in the inferior colliculus.
TS14: future spinal cord Moderate Regionally restricted Expression is in the distal spinal cord, absent in proximal spinal cord.
TS14: future diencephalon Absent Absent in the thalamus.
TS14: prosencephalon Absent Absent in cerebral cortex.

Specimen Table 1 E11: embryonic day 11.0; Epha5tm1Jgf/Epha5+ (more )
Structure Level Pattern Image Note
TS18: cranial nerve Moderate
TS18: retina Moderate
TS18: midbrain Moderate Regionally restricted Expression is in the pretectum, superior collicus, and is weak in the ventral midbrain.
TS18: future spinal cord Moderate Regionally restricted Expression is in the distal spinal cord, absent in proximal spinal cord.
TS18: hindbrain Weak Regionally restricted Expression is in the pons and cerebellum.
TS18: diencephalon Weak Regionally restricted Expression is in the epithalamus and hypothalamus, absent in thalamus.
TS18: telencephalon Weak Regionally restricted Expression is in the lateral ganglionic eminence, absent in the medial ganglionic eminence and neocortex.

Specimen Table 1 E13: embryonic day 13.0; Epha5tm1Jgf/Epha5+ (more )
Structure Level Pattern Image Note
TS21: hypoglossal nerve Moderate
TS21: neocortex Moderate
TS21: olfactory lobe Moderate
TS21: retina Moderate
TS21: trigeminal nerve Moderate
TS21: vestibulocochlear nerve Moderate
TS21: midbrain Moderate Regionally restricted Expression is in the pretectum, superior colliculus, and the ventral midbrain, and is absent in the inferior colliculus.
TS21: spinal cord Moderate Regionally restricted Expression is in the distal spinal cord, weak in proximal spinal cord.
TS21: forebrain Weak Regionally restricted Expression is in hippocampus.
TS21: lateral ganglionic eminence Weak
TS21: medial ganglionic eminence Absent
TS21: cerebellum Weak
TS21: epithalamus Weak
TS21: hypothalamus Weak
TS21: pons Weak
TS21: thalamus Absent

Specimen Table 1 E15: embryonic day 15.0; Epha5tm1Jgf/Epha5+ (more )
Structure Level Pattern Image Note
TS23: hippocampus Moderate
TS23: hypoglossal nerve Moderate
TS23: main olfactory bulb Moderate
TS23: neocortex Moderate
TS23: pretectum Moderate
TS23: retina Moderate
TS23: superior colliculus Moderate
TS23: trigeminal nerve Moderate
TS23: vestibulocochlear nerve Moderate
TS23: midbrain Weak Regionally restricted Expression is in the ventral midbrain.
TS23: lateral ganglionic eminence Weak
TS23: medial ganglionic eminence Absent
TS23: spinal cord Moderate Regionally restricted Expression is in the distal spinal cord, weak in proximal spinal cord.
TS23: cerebellum Weak
TS23: epithalamus Weak
TS23: hypothalamus Weak
TS23: pons Weak
TS23: thalamus Trace The text states that expression in the thalamic nuclei were either negative or weak. The table indicates expression is absent in the thalamus.
TS23: inferior colliculus Absent

Specimen Table 1 E17: embryonic day 17.0; Epha5tm1Jgf/Epha5+ (more )
Structure Level Pattern Image Note
TS25: telencephalon Strong Regionally restricted Expression is in the induseum griseum, weak in claustrum and lateral septum and absent in the globus pallidus and medial septum.
TS25: hippocampus Strong
TS25: main olfactory bulb Moderate
TS25: neocortex Moderate
TS25: retina Moderate
TS25: spinal cord Moderate
TS25: cerebral cortex Moderate Regionally restricted Strong in piriform cortex, moderate in cingulate, entorhinal, insular, and parietal, weak in frontal,
TS25: caudate-putamen Weak
TS25: cerebellum Weak
TS25: epithalamus Weak
TS25: hypothalamus Weak
TS25: pons Weak
TS25: pretectum Weak
TS25: superior colliculus Weak
TS25: thalamus Weak
TS25: midbrain Weak Regionally restricted Expression is in the ventral midbrain.
TS25: inferior colliculus Absent

Specimen Table 2 P0: postnatal day 0; Epha5tm1Jgf/Epha5+ (more )
Structure Level Pattern Image Note
TS27: hippocampus CA1 Strong
TS27: hippocampus CA2 Strong
TS27: hippocampus CA3 Strong
TS27: indusium griseum Strong
TS27: hippocampus pyramidal cell layer Moderate
TS27: accessory olfactory bulb granule cell layer Weak
TS27: amygdalohippocampal area Weak
TS27: amygdalopiriform transition area Weak
TS27: anterior amygdaloid area Weak
TS27: anterior thalamic group Weak
TS27: basolateral amygdaloid nucleus Weak
TS27: basomedial amygdaloid nucleus Weak
TS27: bed nucleus of stria terminalis Weak
TS27: brain subventricular zone Weak
TS27: central amygdaloid nucleus Weak
TS27: cerebellum Purkinje cell layer Weak
TS27: cingulate cortex Weak
TS27: claustrum Weak
TS27: cortical layer II Weak
TS27: cortical layer III Weak
TS27: cortical layer IV Weak
TS27: cortical layer V Weak
TS27: cortical layer VI Weak
TS27: endopiriform nucleus Weak
TS27: fasciola cinereum Weak
TS27: hippocampus stratum oriens Weak
TS27: insular cortex Weak
TS27: intralaminar thalamic group Weak
TS27: lateral amygdaloid nucleus Weak
TS27: lateral hypothalamic area Weak
TS27: lateral septal complex Weak
TS27: lateral thalamic group Weak
TS27: main olfactory bulb glomerular layer Weak
TS27: main olfactory bulb granule cell layer Weak
TS27: main olfactory bulb internal plexiform layer Weak
TS27: main olfactory bulb mitral cell layer Weak
TS27: medial amygdaloid nucleus Weak
TS27: nucleus of diagonal band Weak
TS27: nucleus reuniens Weak
TS27: pallidum Weak
TS27: piriform cortex Weak
TS27: primary motor cortex Weak
TS27: primary somatosensory cortex Weak
TS27: secondary somatosensory cortex Weak
TS27: substantia nigra Weak
TS27: taenia tecta Weak
TS27: ventral tegmental area Weak
TS27: zona incerta Weak
TS27: dentate gyrus polymorphic layer Weak There is a discrepancy between the text and the table, Fig 10D,E states expression is abent in the dentate gyrus but table 2 indicates expression.
TS27: anterior olfactory nucleus Weak Regionally restricted Weak in dorsal and lateral, absent in external, medial, and ventral anterior olfactory nuclei.
TS27: anterior commissure Absent
TS27: arcuate nucleus Absent
TS27: barrel cortex Absent
TS27: cerebellum external granule cell layer Absent
TS27: cerebellum molecular layer Absent
TS27: corpus callosum Absent
TS27: cortical amygdaloid nucleus Absent
TS27: cortical layer I Absent
TS27: dentate gyrus granule cell layer Absent
TS27: dentate gyrus molecular layer Absent
TS27: dorsal lateral geniculate nucleus Absent
TS27: dorsal raphe nucleus Absent
TS27: dorsomedial hypothalamic nucleus Absent
TS27: edinger-westphal nucleus Absent
TS27: fimbria hippocampus Absent
TS27: globus pallidus Absent
TS27: hippocampus molecular layer Absent
TS27: hippocampus stratum lacunosum Absent
TS27: hippocampus stratum lucidum Absent
TS27: interpeduncular nucleus Absent
TS27: lateral habenular nucleus Absent
TS27: lateral mammillary nucleus Absent
TS27: lateral preoptic area Absent
TS27: main olfactory bulb external plexiform layer Absent
TS27: main olfactory bulb olfactory nerve layer Absent
TS27: medial geniculate nucleus Absent
TS27: medial habenular nucleus Absent
TS27: medial mammillary nucleus Absent
TS27: medial preoptic nucleus Absent
TS27: nucleus of lateral olfactory tract Absent
TS27: paraventricular hypothalamic nucleus Absent
TS27: periaqueductal grey Absent
TS27: pontine nucleus Absent
TS27: pontine reticular formation Absent
TS27: posterolateral cortical amygdaloid nucleus Absent
TS27: posteromedial cortical amygdaloid nucleus Absent
TS27: red nucleus Absent
TS27: reticular thalamic nucleus Absent
TS27: septofimbrial nucleus Absent
TS27: septohippocampal nucleus Absent
TS27: superior colliculus Absent
TS27: suprachiasmatic nucleus Absent
TS27: supramammillary nucleus Absent
TS27: supraoptic nucleus Absent
TS27: ventral lateral geniculate nucleus Absent
TS27: ventral posterior thalamic group Absent
TS27: ventromedial hypothalamic nucleus Absent
TS27: accumbens nucleus Absent There is a discrepancy between the text and the table, Fig 10C states expression is present but table 2 indicates absence of expression.
TS27: caudate-putamen Absent There is a discrepancy between the text and the table, Fig 10C states expression is present but table 2 indicates absence of expression.

Specimen Table 2 P6: postnatal day 6; Epha5tm1Jgf/Epha5+ (more )
Structure Level Pattern Image Note
TS28: fasciola cinereum Strong
TS28: hippocampus CA1 Strong
TS28: hippocampus CA2 Strong
TS28: hippocampus CA3 Strong
TS28: hippocampus pyramidal cell layer Strong
TS28: indusium griseum Strong
TS28: piriform cortex Strong
TS28: barrel cortex Moderate
TS28: bed nucleus of stria terminalis Moderate
TS28: cortical layer II Moderate
TS28: cortical layer III Moderate
TS28: cortical layer IV Moderate
TS28: cortical layer V Moderate
TS28: cortical layer VI Moderate
TS28: dentate gyrus granule cell layer Moderate
TS28: dentate gyrus molecular layer Moderate
TS28: dentate gyrus polymorphic layer Moderate
TS28: endopiriform nucleus Moderate
TS28: hippocampus molecular layer Moderate
TS28: hippocampus stratum lacunosum Moderate
TS28: hippocampus stratum lucidum Moderate
TS28: hippocampus stratum oriens Moderate
TS28: insular cortex Moderate
TS28: lateral septal complex Moderate
TS28: main olfactory bulb glomerular layer Moderate
TS28: main olfactory bulb mitral cell layer Moderate
TS28: nucleus of diagonal band Moderate
TS28: nucleus reuniens Moderate
TS28: pallidum Moderate
TS28: primary motor cortex Moderate
TS28: primary somatosensory cortex Moderate
TS28: secondary somatosensory cortex Moderate
TS28: substantia nigra Moderate
TS28: taenia tecta Moderate
TS28: ventral tegmental area Moderate
TS28: accessory olfactory bulb granule cell layer Weak
TS28: amygdalohippocampal area Weak
TS28: amygdalopiriform transition area Weak
TS28: anterior amygdaloid area Weak
TS28: anterior dorsal thalamic nucleus Weak
TS28: anterior olfactory nucleus Weak
TS28: basolateral amygdaloid nucleus Weak
TS28: basomedial amygdaloid nucleus Weak
TS28: brain subventricular zone Weak
TS28: caudate-putamen Weak
TS28: central amygdaloid nucleus Weak
TS28: cerebellum Purkinje cell layer Weak
TS28: cingulate cortex Weak
TS28: claustrum Weak
TS28: cortical layer I Weak
TS28: dorsal lateral geniculate nucleus Weak
TS28: dorsal raphe nucleus Weak
TS28: edinger-westphal nucleus Weak
TS28: interpeduncular nucleus Weak
TS28: intralaminar thalamic group Weak
TS28: lateral amygdaloid nucleus Weak
TS28: lateral habenular nucleus Weak
TS28: lateral hypothalamic area Weak
TS28: lateral mammillary nucleus Weak
TS28: lateral thalamic group Weak
TS28: main olfactory bulb granule cell layer Weak
TS28: main olfactory bulb internal plexiform layer Weak
TS28: main olfactory bulb olfactory nerve layer Weak
TS28: medial amygdaloid nucleus Weak
TS28: medial septal complex Weak
TS28: paracentral nucleus Weak
TS28: paraventricular thalamic nucleus Weak
TS28: periaqueductal grey Weak
TS28: pontine reticular formation Weak
TS28: posterior amygdaloid nucleus Weak
TS28: posterolateral cortical amygdaloid nucleus Weak
TS28: posteromedial cortical amygdaloid nucleus Weak
TS28: septofimbrial nucleus Weak
TS28: septohippocampal nucleus Weak
TS28: superior colliculus Weak
TS28: ventral lateral geniculate nucleus Weak
TS28: zona incerta Weak
TS28: accumbens nucleus Absent
TS28: anterior commissure Absent
TS28: anterior ventral thalamic nucleus Absent
TS28: arcuate nucleus Absent
TS28: cerebellum external granule cell layer Absent
TS28: cerebellum molecular layer Absent
TS28: corpus callosum Absent
TS28: dorsomedial hypothalamic nucleus Absent
TS28: fimbria hippocampus Absent
TS28: globus pallidus Absent
TS28: lateral preoptic area Absent
TS28: main olfactory bulb external plexiform layer Absent
TS28: medial geniculate nucleus Absent
TS28: medial habenular nucleus Absent
TS28: medial mammillary nucleus Absent
TS28: medial preoptic nucleus Absent
TS28: nucleus of lateral olfactory tract Absent
TS28: paraventricular hypothalamic nucleus Absent
TS28: pontine nucleus Absent
TS28: red nucleus Absent
TS28: reticular thalamic nucleus Absent
TS28: suprachiasmatic nucleus Absent
TS28: supramammillary nucleus Absent
TS28: supraoptic nucleus Absent
TS28: ventral posterior lateral thalamic nucleus Absent
TS28: ventral posterior medial thalamic nucleus Absent
TS28: ventromedial hypothalamic nucleus Absent

Specimen Table 2 Adult: postnatal adult; Epha5tm1Jgf/Epha5+ (more )
Structure Level Pattern Image Note
TS28: barrel cortex Strong
TS28: claustrum Strong
TS28: dentate gyrus granule cell layer Strong
TS28: dentate gyrus polymorphic layer Strong
TS28: endopiriform nucleus Strong
TS28: fasciola cinereum Strong
TS28: hippocampus CA1 Strong
TS28: hippocampus CA2 Strong
TS28: hippocampus CA3 Strong
TS28: hippocampus pyramidal cell layer Strong
TS28: hippocampus stratum oriens Strong
TS28: indusium griseum Strong
TS28: main olfactory bulb mitral cell layer Strong
TS28: nucleus of diagonal band Strong
TS28: piriform cortex Strong
TS28: primary somatosensory cortex Strong
TS28: secondary somatosensory cortex Strong
TS28: taenia tecta Strong
TS28: accessory olfactory bulb granule cell layer Moderate
TS28: amygdalohippocampal area Moderate
TS28: amygdalopiriform transition area Moderate
TS28: anterior amygdaloid area Moderate
TS28: basolateral amygdaloid nucleus Moderate
TS28: basomedial amygdaloid nucleus Moderate
TS28: bed nucleus of stria terminalis Moderate
TS28: central amygdaloid nucleus Moderate
TS28: cingulate cortex Moderate
TS28: cortical layer I Moderate
TS28: cortical layer II Moderate
TS28: cortical layer III Moderate
TS28: cortical layer IV Moderate
TS28: cortical layer V Moderate
TS28: cortical layer VI Moderate
TS28: dentate gyrus molecular layer Moderate
TS28: hippocampus molecular layer Moderate
TS28: hippocampus stratum lacunosum Moderate
TS28: insular cortex Moderate
TS28: lateral amygdaloid nucleus Moderate
TS28: lateral hypothalamic area Moderate
TS28: main olfactory bulb external plexiform layer Moderate
TS28: main olfactory bulb glomerular layer Moderate
TS28: main olfactory bulb granule cell layer Moderate
TS28: medial amygdaloid nucleus Moderate
TS28: medial mammillary nucleus Moderate
TS28: nucleus reuniens Moderate
TS28: pallidum Moderate
TS28: periaqueductal grey Moderate
TS28: posterior amygdaloid nucleus Moderate
TS28: primary motor cortex Moderate
TS28: substantia nigra Moderate
TS28: supramammillary nucleus Moderate
TS28: ventral tegmental area Moderate
TS28: anterior olfactory nucleus Moderate Regionally restricted Moderate in dorsal, lateral, and medial, weak in external and ventral anterior olfactory nuclei.
TS28: anterior commissure Weak
TS28: anterior dorsal thalamic nucleus Weak
TS28: anterior ventral thalamic nucleus Weak
TS28: caudate-putamen Weak
TS28: cerebellum Purkinje cell layer Weak
TS28: corpus callosum Weak
TS28: cortical amygdaloid nucleus Weak
TS28: dorsal lateral geniculate nucleus Weak
TS28: dorsal raphe nucleus Weak
TS28: dorsomedial hypothalamic nucleus Weak
TS28: edinger-westphal nucleus Weak
TS28: hippocampus stratum lucidum Weak
TS28: interpeduncular nucleus Weak
TS28: intralaminar thalamic group Weak
TS28: lateral habenular nucleus Weak
TS28: lateral preoptic area Weak
TS28: lateral septal complex Weak
TS28: lateral thalamic group Weak
TS28: main olfactory bulb internal plexiform layer Weak
TS28: main olfactory bulb olfactory nerve layer Weak
TS28: medial preoptic nucleus Weak
TS28: medial septal complex Weak
TS28: nucleus of lateral olfactory tract Weak
TS28: paracentral nucleus Weak
TS28: paraventricular hypothalamic nucleus Weak
TS28: paraventricular thalamic nucleus Weak
TS28: pontine reticular formation Weak
TS28: posterolateral cortical amygdaloid nucleus Weak
TS28: posteromedial cortical amygdaloid nucleus Weak
TS28: reticular thalamic nucleus Weak
TS28: septofimbrial nucleus Weak
TS28: septohippocampal nucleus Weak
TS28: superior colliculus Weak
TS28: ventral lateral geniculate nucleus Weak
TS28: ventromedial hypothalamic nucleus Weak
TS28: zona incerta Weak
TS28: accumbens nucleus Absent
TS28: arcuate nucleus Absent
TS28: brain subventricular zone Absent
TS28: cerebellum external granule cell layer Absent
TS28: cerebellum molecular layer Absent
TS28: fimbria hippocampus Absent
TS28: globus pallidus Absent
TS28: lateral mammillary nucleus Absent
TS28: medial geniculate nucleus Absent
TS28: medial habenular nucleus Absent
TS28: pontine nucleus Absent
TS28: red nucleus Absent
TS28: suprachiasmatic nucleus Absent
TS28: supraoptic nucleus Absent
TS28: ventral posterior lateral thalamic nucleus Absent
TS28: ventral posterior medial thalamic nucleus Absent


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last database update
05/28/2024
MGI 6.13
The Jackson Laboratory