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Gene Expression Data
Assay Details
Assay
Reference: J:187352 Abellan A, et al., Similarities and differences in the forebrain expression of Lhx1 and Lhx5 between chicken and mouse: Insights for understanding telencephalic development and evolution. J Comp Neurol. 2010 Sep 1;518(17):3512-28
Assay type: RNA in situ
MGI Accession ID: MGI:5516337
Gene symbol: Lhx5
Gene name: LIM homeobox protein 5
Probe: Lhx5 cDNA6
Probe preparation: Antisense labelled with digoxigenin RNA
Visualized with: Alkaline phosphatase
Assay notes: Vibratome sections.
Results
Specimen not shown: embryonic day 11.5 (more )
Structure Level Pattern Image Note
TS19: telencephalon Present Regionally restricted Expression is in the cortical hem.

Specimen 1A: embryonic day 12.5 (more )
Structure Level Pattern Image Note
TS20: telencephalon Present Regionally restricted 1A

Specimen 1B: embryonic day 12.5 (more )
Structure Level Pattern Image Note
TS20: telencephalon Present Regionally restricted 1B Expression includes the retrobulbar area and the septum.
TS20: telencephalon marginal layer Present Regionally restricted 1B Expression is in the marginal zone of the pallium.
TS20: telencephalon mantle layer Present Regionally restricted 1B Expression is in a domain in the dorsal part of the septum in the ventricular zone and mantle layer.
TS20: telencephalon ventricular layer Present Regionally restricted 1B Expression is in a domain in the dorsal part of the septum in the ventricular zone and mantle layer.

Specimen 1C: embryonic day 12.5 (more )
Structure Level Pattern Image Note
TS20: telencephalon Present Regionally restricted 1C Expression includes the septum.
TS20: telencephalon marginal layer Present Regionally restricted 1C Expression is in the marginal zone of the pallium.
TS20: telencephalon mantle layer Present Regionally restricted 1C Expression is in a domain in the dorsal part of the septum in the ventricular zone and mantle layer.
TS20: telencephalon ventricular layer Present Regionally restricted 1C Expression is in a domain in the dorsal part of the septum in the ventricular zone and mantle layer.

Specimen 1D: embryonic day 12.5 (more )
Structure Level Pattern Image Note
TS20: telencephalon Present Regionally restricted 1D Expression includes the septum.
TS20: telencephalon marginal layer Present Regionally restricted 1D Expression is in the marginal zone of the pallium.

Specimen 1E: embryonic day 12.5 (more )
Structure Level Pattern Image Note
TS20: telencephalon Present Regionally restricted 1E Includes the the preoptic region.
TS20: diencephalon Present Regionally restricted 1E Expression is in the alar part of prosomere 3, including the prethalamus and the eminentia thalami.
TS20: telencephalon marginal layer Present Regionally restricted 1E Expression is in the marginal zone of the pallium.

Specimen 1F: embryonic day 12.5 (more )
Structure Level Pattern Image Note
TS20: telencephalon Present Regionally restricted 1F
TS20: telencephalon marginal layer Present Regionally restricted 1F Expression is in the marginal zone of the pallium.
TS20: diencephalon Present Regionally restricted 1F Expression is in the alar part of prosomere 3, including the prethalamus and the eminentia thalami.

Specimen 1G: embryonic day 12.5 (more )
Structure Level Pattern Image Note
TS20: telencephalon Present Regionally restricted 1G
TS20: telencephalon marginal layer Present Regionally restricted 1G Expression is in the marginal zone of the pallium.
TS20: diencephalon Present Regionally restricted 1G Expression is in the alar part of prosomere 3, including the prethalamus and the eminentia thalami.

Specimen 1H: embryonic day 12.5 (more )
Structure Level Pattern Image Note
TS20: diencephalon Present Regionally restricted 1H Expression is in the alar part of prosomere 3, including the prethalamus and the eminentia thalami.
TS20: telencephalon Present Regionally restricted 1H
TS20: hypothalamus Present Regionally restricted 1H Expression is in the supraopto-paraventricular embryonic domain.

Specimen 2A: embryonic day 13.5 (more )
Structure Level Pattern Image Note
TS21: telencephalon Present Regionally restricted 2A Includes the pallial septum.
TS21: telencephalon mantle layer Present Regionally restricted 2A Expression is in a domain in the dorsal part of the septum in the ventricular zone and mantle layer.
TS21: telencephalon ventricular layer Present Regionally restricted 2A Expression is in a domain in the dorsal part of the septum in the ventricular zone and mantle layer.

Specimen 2B: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS22: telencephalon Present Regionally restricted 2B Expression is in the preoptic progenitor domains and their derivatives in the medial and/or lateral preoptic nuclei, and some related parts of the basal telencephalon.
TS22: hypothalamus Present Regionally restricted 2B Expression is in the supraopto-paraventricular embryonic domain.

Specimen 2C: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS22: telencephalon Present Regionally restricted 2C Expression is in the preoptic progenitor domains and their derivatives in the medial and/or lateral preoptic nuclei, and some related parts of the basal telencephalon.
TS22: hypothalamus Present Regionally restricted 2C Expression is in the supraopto-paraventricular embryonic domain.

Specimen 2D: embryonic day 16.5 (more )
Structure Level Pattern Image Note
TS24: telencephalon Present Regionally restricted 2D
TS24: main olfactory bulb Weak 2D

Specimen 2E: embryonic day 16.5 (more )
Structure Level Pattern Image Note
TS24: telencephalon Present Regionally restricted 2E Includes the pallial septum, the postmitotic cells in the septohippocampal nucleus, medial septal nucleus, and vertical limb of the diagonal band nucleus.

Specimen 2F: embryonic day 16.5 (more )
Structure Level Pattern Image Note
TS24: telencephalon marginal layer Present Regionally restricted 2F Expression is in the marginal zone of the pallium and in the preoptic progenitor domains and their derivatives in the medial and/or lateral preoptic nuclei, and some related parts of the basal telencephalon.

Specimen 2G: embryonic day 16.5 (more )
Structure Level Pattern Image Note
TS24: telencephalon marginal layer Present Regionally restricted 2G Expression is in the marginal zone of the pallium and in the preoptic progenitor domains and their derivatives in the medial and/or lateral preoptic nuclei, and some related parts of the basal telencephalon.
TS24: hypothalamus Present Regionally restricted 2G Expression is in the supraopto-paraventricular embryonic domain.

Specimen 2H: embryonic day 16.5 (more )
Structure Level Pattern Image Note
TS24: telencephalon marginal layer Present Regionally restricted 2H Expression is in the marginal zone of the pallium.

Specimen 2I: embryonic day 18.5 (more )
Structure Level Pattern Image Note
TS26: telencephalon Present Regionally restricted 2I Expression is in the marginal zone of the pallium, the postmitotic cells in the septohippocampal nucleus, medial septal nucleus, and vertical limb of the diagonal band nucleus.

Specimen 2J: embryonic day 18.5 (more )
Structure Level Pattern Image Note
TS26: telencephalon Present Regionally restricted 2J Expression is in the marginal zone of the pallium, the preoptic region, the postmitotic cells in the septohippocampal nucleus, medial septal nucleus, and vertical limb of the diagonal band nucleus.

Specimen 2K: embryonic day 18.5 (more )
Structure Level Pattern Image Note
TS26: telencephalon Present Regionally restricted 2K Expression is in the marginal zone of the pallium, and is strong in the basal preoptic area and derivatives, and moderately in the commissural preoptic area.

Specimen 2L: embryonic day 18.5 (more )
Structure Level Pattern Image Note
TS26: telencephalon Present Regionally restricted 2L Expression is in the marginal zone of the pallium and in the preoptic progenitor domains and their derivatives in the medial and/or lateral preoptic nuclei, and some related parts of the basal telencephalon.
TS26: hypothalamus Present Regionally restricted 2L Expression is in paraventricular and supraoptic nuclei, and in some parts of the anterior hypothalamic area.

Specimen 2M: embryonic day 18.5 (more )
Structure Level Pattern Image Note
TS26: telencephalon Present Regionally restricted 2M Expression is in the marginal zone of the pallium and in the preoptic progenitor domains and their derivatives in the medial and/or lateral preoptic nuclei, and some related parts of the basal telencephalon.
TS26: hypothalamus Present Regionally restricted 2M Expression is in paraventricular and supraoptic nuclei, and in some parts of the anterior hypothalamic area.

Specimen 2N: embryonic day 18.5 (more )
Structure Level Pattern Image Note
TS26: telencephalon Present Regionally restricted 2N Expression is in the marginal zone of the pallium.

Specimen 3D: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS22: telencephalon Present Regionally restricted 3D Expression is in the postmitotic cells in the septohippocampal nucleus, medial septal nucleus, and vertical limb of the diagonal band nucleus.
TS22: hypothalamus Present Regionally restricted 3D Expression is in the supraopto-paraventricular embryonic domain.

Specimen 3F: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS22: telencephalon Present Regionally restricted 3F
TS22: hypothalamus Present Regionally restricted 3F Expression is in the supraopto-paraventricular embryonic domain.

Specimen 3G: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS22: telencephalon Present Regionally restricted 3G Expression is in the postmitotic cells in the septohippocampal nucleus, medial septal nucleus, vertical limb of the diagonal band nucleus, and the preoptic region.
TS22: hypothalamus Present Regionally restricted 3G Expression is in the supraopto-paraventricular embryonic domain.


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Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/18/2025
MGI 6.24
The Jackson Laboratory