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Gene Expression Data
Assay Details
Assay
Reference: J:122989 Visel A, et al., GenePaint.org: an atlas of gene expression patterns in the mouse embryo. Nucleic Acids Res. 2004 Jan 1;32(Database issue):D552-6
Assay type: RNA in situ
MGI Accession ID: MGI:5421044
Gene symbol: Taf1d
Gene name: TATA-box binding protein associated factor, RNA polymerase I, D
Probe: MH458 probe 385
Probe preparation: Antisense labelled with digoxigenin RNA
Visualized with: Alkaline phosphatase
Assay notes: Cryosections of fresh frozen material were fixed in 4% paraformaldehyde for 20 min. before further processing. A tyramide-biotin/streptavidin amplification step was included in the in situ hybridization procedure. These data were downloaded from GenePaint.org on 1/30/12.
Results
Specimen MH458; Specimen C1213: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS22: nervous system Strong Regionally restricted Embryo_C1213_6_3C
TS22: central nervous system Strong Regionally restricted Embryo_C1213_6_3C
TS22: telencephalon Strong Regionally restricted Embryo_C1213_6_3C
TS22: cerebral cortex Strong Regionally restricted Embryo_C1213_6_3C
TS22: neocortex Strong Regionally restricted Embryo_C1213_6_3C
TS22: olfactory cortex Weak Regionally restricted Embryo_C1213_6_5B
TS22: main olfactory bulb Weak Regionally restricted Embryo_C1213_6_5B
TS22: piriform cortex Absent
TS22: hippocampus Strong Regionally restricted Embryo_C1213_6_3C
TS22: basal ganglia Weak Ubiquitous Embryo_C1213_6_3D
TS22: corpus striatum Weak Regionally restricted Embryo_C1213_6_2C Expression was weak in the corpus striatum (lateral ganglionic eminence).
TS22: basal forebrain Absent
TS22: amygdala Absent
TS22: telencephalon septum Absent
TS22: pallidum Weak Regionally restricted Embryo_C1213_6_3D Expression was weak in the pallidum (medial ganglionic eminence).
TS22: diencephalon Absent
TS22: thalamus Absent
TS22: hypothalamus Absent
TS22: midbrain Moderate Regionally restricted Embryo_C1213_6_4B
TS22: pretectum Absent
TS22: superior colliculus Weak Regionally restricted Embryo_C1213_6_4B
TS22: inferior colliculus Moderate Regionally restricted Embryo_C1213_6_4B
TS22: midbrain tegmentum Absent
TS22: hindbrain Weak Regionally restricted Embryo_C1213_6_3C
TS22: cerebellum Weak Regionally restricted Embryo_C1213_6_4B
TS22: pons Weak Regionally restricted Embryo_C1213_6_3D
TS22: medulla oblongata Absent
TS22: spinal cord Absent
TS22: choroid plexus Absent
TS22: meninges Absent
TS22: peripheral nervous system Weak Regionally restricted Embryo_C1213_6_6A
TS22: cranial ganglion Weak Regionally restricted Embryo_C1213_6_6A
TS22: dorsal root ganglion Absent
TS22: eye Weak Regionally restricted Embryo_C1213_6_1C
TS22: retina Weak Regionally restricted Embryo_C1213_6_1C
TS22: lens Weak Regionally restricted Embryo_C1213_6_1B
TS22: cornea Weak Regionally restricted Embryo_C1213_6_1A
TS22: optic nerve Absent
TS22: nose Weak Regionally restricted Embryo_C1213_6_5C
TS22: olfactory epithelium Weak Regionally restricted Embryo_C1213_6_5C
TS22: ear Absent
TS22: inner ear Absent
TS22: cochlea Absent
TS22: inner ear labyrinth Absent
TS22: middle ear Absent
TS22: alimentary system Strong Regionally restricted Embryo_C1213_6_6A Expression was strong in the digestive system.
TS22: intestine Moderate Regionally restricted Embryo_C1213_6_4B
TS22: salivary gland Strong Regionally restricted Embryo_C1213_6_6A
TS22: tongue Absent
TS22: tooth Weak Regionally restricted Embryo_C1213_6_4A
TS22: palatal shelf Weak Regionally restricted Embryo_C1213_6_4A
TS22: esophagus Weak Regionally restricted Embryo_C1213_6_4C
TS22: stomach Weak Regionally restricted Embryo_C1213_6_6A
TS22: liver Weak Regionally restricted Embryo_C1213_6_6A
TS22: respiratory system Moderate Regionally restricted Embryo_C1213_6_5C
TS22: pharynx Weak Regionally restricted Embryo_C1213_6_4B
TS22: larynx Absent
TS22: trachea Absent
TS22: main bronchus Absent
TS22: lung Moderate Regionally restricted Embryo_C1213_6_5C
TS22: urinary system Weak Regionally restricted Embryo_C1213_6_4B Expression was weak in the genito-urinary system.
TS22: metanephros Weak Regionally restricted Embryo_C1213_6_5C
TS22: ureter Absent
TS22: bladder Absent
TS22: urethra Weak Regionally restricted Embryo_C1213_6_4B
TS22: reproductive system Weak Regionally restricted Embryo_C1213_6_4B
TS22: genital tubercle Weak Regionally restricted Embryo_C1213_6_4B
TS22: gonad Absent
TS22: gland Weak Regionally restricted Embryo_C1213_6_5B Expression was weak in the endocrine system.
TS22: thyroid gland Absent
TS22: pituitary gland Absent
TS22: pancreas Absent
TS22: adrenal gland Absent
TS22: cardiovascular system Absent
TS22: heart Absent
TS22: heart atrium Absent
TS22: heart ventricle Absent
TS22: blood vessel Absent
TS22: hemolymphoid system Weak Regionally restricted Embryo_C1213_6_4D Expression was weak in the immune system.
TS22: spleen primordium Absent
TS22: thymus primordium Weak Regionally restricted Embryo_C1213_6_4D
TS22: appendicular skeleton Absent Expression was not detected in the skeleton (limbs, shoulder, hip).
TS22: musculature Absent
TS22: face Weak Regionally restricted Embryo_C1213_6_5B Expression was weak in the face/soft tissues.
TS22: facial bone primordium Absent
TS22: cranium Weak Regionally restricted Embryo_C1213_6_4C Expression was weak in the skull (base and vault).
TS22: axial skeleton Moderate Regionally restricted Embryo_C1213_6_4B
TS22: tail Absent
TS22: forelimb Weak Regionally restricted Embryo_C1213_6_1B
TS22: hindlimb Weak Regionally restricted Embryo_C1213_6_1B
TS22: integumental system Weak Regionally restricted Embryo_C1213_6_2B
TS22: skin Absent
TS22: hair Weak Regionally restricted Embryo_C1213_6_2B
TS22: vibrissa follicle Weak Regionally restricted Embryo_C1213_6_2B Expression was weak in whisker follicle.
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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10/22/2024
MGI 6.24 		The Jackson Laboratory