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Gene Expression Data
Assay Details
Assay
Reference: J:162220 Magdaleno S, et al., BGEM: an in situ hybridization database of gene expression in the embryonic and adult mouse nervous system. PLoS Biol. 2006 Apr;4(4):e86
Assay type: RNA in situ
MGI Accession ID: MGI:4945988
Gene symbol: Cln3
Gene name: CLN3 lysosomal/endosomal transmembrane protein, battenin
Probe: g02520
Probe preparation: Antisense labelled with P33 RNA
Visualized with: Autoradiography
Results
Specimen g02520 E11.5: embryonic day 11.5 (more )
Structure Level Pattern Image Note
TS19: diencephalon Present Widespread g02520_sj_g61_098_e11 , g02520_sj_g61_048_e11
TS19: midbrain Present Widespread g02520_sj_g61_098_e11 , g02520_sj_g61_048_e11
TS19: hindbrain Present Widespread g02520_sj_g61_098_e11 , g02520_sj_g61_048_e11
TS19: future spinal cord Present Widespread g02520_sj_g61_048_e11 , g02520_sj_g61_098_e11
TS19: telencephalon Present Widespread g02520_sj_g61_048_e11 , g02520_sj_g61_098_e11
Specimen g02520 E15.5: embryonic day 15.5 (more )
Structure Level Pattern Image Note
TS23: cerebellum Present Widespread g02520_sj_g63_124_e15 , g02520_sj_g63_074_e15 , g02520_sj_g63_024_e15
TS23: ganglionic eminence Present Widespread g02520_sj_g63_124_e15 , g02520_sj_g63_024_e15 , g02520_sj_g63_074_e15
TS23: hindbrain Present Widespread g02520_sj_g63_124_e15 , g02520_sj_g63_024_e15 , g02520_sj_g63_074_e15
TS23: hippocampus Present Widespread g02520_sj_g63_074_e15 , g02520_sj_g63_024_e15 , g02520_sj_g63_124_e15
TS23: hypothalamus Present Widespread g02520_sj_g63_124_e15 , g02520_sj_g63_024_e15 , g02520_sj_g63_074_e15
TS23: midbrain Present Widespread g02520_sj_g63_074_e15 , g02520_sj_g63_124_e15 , g02520_sj_g63_024_e15
TS23: neocortex Present Widespread g02520_sj_g63_124_e15 , g02520_sj_g63_074_e15 , g02520_sj_g63_024_e15
TS23: spinal cord Present Regionally restricted g02520_sj_g63_124_e15 , g02520_sj_g63_024_e15 , g02520_sj_g63_074_e15 Expression was region specific and scattered.
Specimen g02520 P7: postnatal day 7 (more )
Structure Level Pattern Image Note
TS28: amygdala Present Widespread g02520_sj_g63_124_p7 , g02520_sj_g63_074_p7 , g02520_sj_g63_024_p7
TS28: basal ganglia Present Widespread g02520_sj_g63_024_p7 , g02520_sj_g63_124_p7 , g02520_sj_g63_074_p7
TS28: brainstem Present Widespread g02520_sj_g63_024_p7 , g02520_sj_g63_124_p7 , g02520_sj_g63_074_p7
TS28: choroid plexus Present Regionally restricted g02520_sj_g63_024_p7 , g02520_sj_g63_074_p7 , g02520_sj_g63_124_p7
TS28: hypothalamus Present Widespread g02520_sj_g63_124_p7 , g02520_sj_g63_074_p7 , g02520_sj_g63_024_p7
TS28: meninges Present Regionally restricted g02520_sj_g63_074_p7 , g02520_sj_g63_124_p7 , g02520_sj_g63_024_p7
TS28: midbrain Present Widespread g02520_sj_g63_124_p7 , g02520_sj_g63_074_p7 , g02520_sj_g63_024_p7
TS28: main olfactory bulb Present Widespread g02520_sj_g63_124_p7 , g02520_sj_g63_074_p7 , g02520_sj_g63_024_p7
TS28: retina Present Regionally restricted g02520_sj_g63_074_p7 , g02520_sj_g63_124_p7 , g02520_sj_g63_024_p7
TS28: spinal cord Present Widespread g02520_sj_g63_124_p7 , g02520_sj_g63_024_p7 , g02520_sj_g63_074_p7
TS28: thalamus Present Widespread g02520_sj_g63_024_p7 , g02520_sj_g63_124_p7 , g02520_sj_g63_074_p7
TS28: cerebellum Strong Regionally restricted g02520_sj_g63_074_p7 , g02520_sj_g63_024_p7 , g02520_sj_g63_124_p7 Expression was region specific and scattered.
TS28: cerebral cortex Strong Regionally restricted g02520_sj_g63_124_p7 , g02520_sj_g63_024_p7 , g02520_sj_g63_074_p7 Expression was region specific and scattered.
TS28: hippocampus Strong Widespread g02520_sj_g63_124_p7 , g02520_sj_g63_074_p7 , g02520_sj_g63_024_p7
Specimen g02520 Adult: postnatal day 42 (more )
Structure Level Pattern Image Note
TS28: amygdala Present Widespread g02520_sj_g62_074_ads , g02520_sj_g60_048_adc , g02520_sj_g62_024_ads , g02520_sj_g60_098_adc , g02520_sj_g62_124_ads
TS28: basal ganglia Present Widespread g02520_sj_g62_074_ads , g02520_sj_g62_124_ads , g02520_sj_g60_098_adc , g02520_sj_g62_024_ads , g02520_sj_g60_048_adc
TS28: brainstem Present Regionally restricted g02520_sj_g62_024_ads , g02520_sj_g60_048_adc , g02520_sj_g60_098_adc , g02520_sj_g62_124_ads , g02520_sj_g62_074_ads Expression was region specific and scattered.
TS28: cerebellum Present Widespread g02520_sj_g62_124_ads , g02520_sj_g60_048_adc , g02520_sj_g60_098_adc , g02520_sj_g62_074_ads , g02520_sj_g62_024_ads
TS28: cerebral cortex Present Regionally restricted g02520_sj_g62_124_ads , g02520_sj_g62_024_ads , g02520_sj_g62_074_ads , g02520_sj_g60_098_adc , g02520_sj_g60_048_adc Expression was region specific and scattered.
TS28: choroid plexus Present Regionally restricted g02520_sj_g62_074_ads , g02520_sj_g60_048_adc , g02520_sj_g62_124_ads , g02520_sj_g60_098_adc , g02520_sj_g62_024_ads
TS28: hippocampus Present Regionally restricted g02520_sj_g60_098_adc , g02520_sj_g62_124_ads , g02520_sj_g62_074_ads , g02520_sj_g60_048_adc , g02520_sj_g62_024_ads Expression was region specific and scattered.
TS28: hypothalamus Present Widespread g02520_sj_g60_048_adc , g02520_sj_g62_124_ads , g02520_sj_g62_024_ads , g02520_sj_g62_074_ads , g02520_sj_g60_098_adc
TS28: meninges Present Regionally restricted g02520_sj_g62_074_ads , g02520_sj_g62_124_ads , g02520_sj_g60_048_adc , g02520_sj_g60_098_adc , g02520_sj_g62_024_ads
TS28: midbrain Present Widespread g02520_sj_g60_048_adc , g02520_sj_g62_024_ads , g02520_sj_g60_098_adc , g02520_sj_g62_124_ads , g02520_sj_g62_074_ads
TS28: main olfactory bulb Present Widespread g02520_sj_g60_098_adc , g02520_sj_g60_048_adc , g02520_sj_g62_024_ads , g02520_sj_g62_124_ads , g02520_sj_g62_074_ads
TS28: retina Present Regionally restricted g02520_sj_g62_124_ads , g02520_sj_g62_024_ads , g02520_sj_g60_048_adc , g02520_sj_g62_074_ads , g02520_sj_g60_098_adc
TS28: spinal cord Present Regionally restricted g02520_sj_g62_024_ads , g02520_sj_g62_074_ads , g02520_sj_g60_098_adc , g02520_sj_g62_124_ads , g02520_sj_g60_048_adc Expression was region specific and scattered.
TS28: thalamus Present Widespread g02520_sj_g60_098_adc , g02520_sj_g62_074_ads , g02520_sj_g62_124_ads , g02520_sj_g60_048_adc , g02520_sj_g62_024_ads
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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03/25/2025
MGI 6.24 		The Jackson Laboratory