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Gene Expression Data
Assay Details
Assay
Reference: J:162220 Magdaleno S, et al., BGEM: an in situ hybridization database of gene expression in the embryonic and adult mouse nervous system. PLoS Biol. 2006 Apr;4(4):e86
Assay type: RNA in situ
MGI Accession ID: MGI:4945498
Gene symbol: Hif1a
Gene name: hypoxia inducible factor 1, alpha subunit
Probe: g01024
Probe preparation: Antisense labelled with P33 RNA
Visualized with: Autoradiography
Results
Specimen g01024 E11.5: embryonic day 11.5 (more )
Structure Level Pattern Image Note
TS19: diencephalon Present Widespread g01024_sj_g68_069_e11 , g01024_sj_g68_019_e11
TS19: midbrain Present Widespread g01024_sj_g68_019_e11 , g01024_sj_g68_069_e11
TS19: hindbrain Present Widespread g01024_sj_g68_069_e11 , g01024_sj_g68_019_e11
TS19: future spinal cord Present Widespread g01024_sj_g68_069_e11 , g01024_sj_g68_019_e11
TS19: telencephalon Present Widespread g01024_sj_g68_019_e11 , g01024_sj_g68_069_e11
Specimen g01024 E15.5: embryonic day 15.5 (more )
Structure Level Pattern Image Note
TS23: cerebellum Present Widespread g01024_sj_g76_037_e15 , g01024_sj_g76_137_e15 , g01024_sj_g76_087_e15
TS23: hindbrain Present Widespread g01024_sj_g76_037_e15 , g01024_sj_g76_137_e15 , g01024_sj_g76_087_e15
TS23: hypothalamus Present Widespread g01024_sj_g76_137_e15 , g01024_sj_g76_087_e15 , g01024_sj_g76_037_e15
TS23: midbrain Present Widespread g01024_sj_g76_137_e15 , g01024_sj_g76_037_e15 , g01024_sj_g76_087_e15
TS23: main olfactory bulb Present Widespread g01024_sj_g76_087_e15 , g01024_sj_g76_037_e15 , g01024_sj_g76_137_e15
TS23: spinal cord Present Widespread g01024_sj_g76_137_e15 , g01024_sj_g76_037_e15 , g01024_sj_g76_087_e15
TS23: ganglionic eminence Strong Regionally restricted g01024_sj_g76_037_e15 , g01024_sj_g76_087_e15 , g01024_sj_g76_137_e15 Expression was region specific and scattered.
TS23: hippocampus Strong Regionally restricted g01024_sj_g76_087_e15 , g01024_sj_g76_037_e15 , g01024_sj_g76_137_e15 Expression was region specific and scattered.
TS23: neocortex Strong Regionally restricted g01024_sj_g76_037_e15 , g01024_sj_g76_137_e15 , g01024_sj_g76_087_e15 Expression was region specific and scattered.
TS23: retina Strong g01024_sj_g76_087_e15 , g01024_sj_g76_037_e15 , g01024_sj_g76_137_e15
Specimen g01024 P7: postnatal day 7 (more )
Structure Level Pattern Image Note
TS28: amygdala Present Widespread g01024_sj_g80_126_p7 , g01024_sj_g80_026_p7 , g01024_sj_g80_076_p7
TS28: basal ganglia Present Widespread g01024_sj_g80_126_p7 , g01024_sj_g80_026_p7 , g01024_sj_g80_076_p7
TS28: brainstem Present Regionally restricted g01024_sj_g80_076_p7 , g01024_sj_g80_126_p7 , g01024_sj_g80_026_p7 Expression was region specific and scattered.
TS28: cerebellum Present Regionally restricted g01024_sj_g80_026_p7 , g01024_sj_g80_126_p7 , g01024_sj_g80_076_p7 Expression was region specific and scattered.
TS28: choroid plexus Present Regionally restricted g01024_sj_g80_076_p7 , g01024_sj_g80_126_p7 , g01024_sj_g80_026_p7
TS28: hippocampus Present Regionally restricted g01024_sj_g80_026_p7 , g01024_sj_g80_076_p7 , g01024_sj_g80_126_p7 Expression was region specific and scattered.
TS28: hypothalamus Present Widespread g01024_sj_g80_126_p7 , g01024_sj_g80_026_p7 , g01024_sj_g80_076_p7
TS28: meninges Present Regionally restricted g01024_sj_g80_076_p7 , g01024_sj_g80_026_p7 , g01024_sj_g80_126_p7
TS28: midbrain Present Widespread g01024_sj_g80_126_p7 , g01024_sj_g80_076_p7 , g01024_sj_g80_026_p7
TS28: main olfactory bulb Present Regionally restricted g01024_sj_g80_076_p7 , g01024_sj_g80_126_p7 , g01024_sj_g80_026_p7 Expression was region specific and scattered.
TS28: spinal cord Present Widespread g01024_sj_g80_126_p7 , g01024_sj_g80_026_p7 , g01024_sj_g80_076_p7
TS28: thalamus Present Widespread g01024_sj_g80_126_p7 , g01024_sj_g80_076_p7 , g01024_sj_g80_026_p7
TS28: cerebral cortex Strong Regionally restricted g01024_sj_g80_076_p7 , g01024_sj_g80_126_p7 , g01024_sj_g80_026_p7 Expression was region specific and scattered.
TS28: retina Strong Regionally restricted g01024_sj_g80_076_p7 , g01024_sj_g80_026_p7 , g01024_sj_g80_126_p7
Specimen g01024 Adult: postnatal day 42 (more )
Structure Level Pattern Image Note
TS28: amygdala Present Widespread g01024_sj_g77_084_adc , g01024_sj_g77_084_ads , g01024_sj_g77_034_adc , g01024_sj_g77_134_ads , g01024_sj_g77_034_ads
TS28: basal ganglia Present Widespread g01024_sj_g77_034_ads , g01024_sj_g77_034_adc , g01024_sj_g77_084_adc , g01024_sj_g77_134_ads , g01024_sj_g77_084_ads
TS28: brainstem Present Widespread g01024_sj_g77_034_adc , g01024_sj_g77_084_adc , g01024_sj_g77_134_ads , g01024_sj_g77_034_ads , g01024_sj_g77_084_ads
TS28: cerebellum Present Regionally restricted g01024_sj_g77_084_ads , g01024_sj_g77_134_ads , g01024_sj_g77_034_adc , g01024_sj_g77_034_ads , g01024_sj_g77_084_adc Expression was region specific and scattered.
TS28: cerebral cortex Present Regionally restricted g01024_sj_g77_034_ads , g01024_sj_g77_084_ads , g01024_sj_g77_034_adc , g01024_sj_g77_084_adc , g01024_sj_g77_134_ads Expression was region specific and scattered.
TS28: choroid plexus Present Regionally restricted g01024_sj_g77_034_ads , g01024_sj_g77_084_ads , g01024_sj_g77_084_adc , g01024_sj_g77_134_ads , g01024_sj_g77_034_adc
TS28: hippocampus Present Regionally restricted g01024_sj_g77_084_adc , g01024_sj_g77_034_adc , g01024_sj_g77_034_ads , g01024_sj_g77_134_ads , g01024_sj_g77_084_ads Expression was region specific and scattered.
TS28: hypothalamus Present Widespread g01024_sj_g77_034_adc , g01024_sj_g77_134_ads , g01024_sj_g77_034_ads , g01024_sj_g77_084_adc , g01024_sj_g77_084_ads
TS28: meninges Present Regionally restricted g01024_sj_g77_084_adc , g01024_sj_g77_134_ads , g01024_sj_g77_034_ads , g01024_sj_g77_084_ads , g01024_sj_g77_034_adc
TS28: midbrain Present Widespread g01024_sj_g77_134_ads , g01024_sj_g77_084_ads , g01024_sj_g77_034_ads , g01024_sj_g77_084_adc , g01024_sj_g77_034_adc
TS28: main olfactory bulb Present Regionally restricted g01024_sj_g77_034_ads , g01024_sj_g77_134_ads , g01024_sj_g77_034_adc , g01024_sj_g77_084_adc , g01024_sj_g77_084_ads Expression was region specific and scattered.
TS28: retina Present Regionally restricted g01024_sj_g77_084_adc , g01024_sj_g77_084_ads , g01024_sj_g77_034_adc , g01024_sj_g77_034_ads , g01024_sj_g77_134_ads
TS28: spinal cord Present Widespread g01024_sj_g77_134_ads , g01024_sj_g77_084_adc , g01024_sj_g77_034_adc , g01024_sj_g77_084_ads , g01024_sj_g77_034_ads
TS28: thalamus Present Widespread g01024_sj_g77_084_ads , g01024_sj_g77_034_ads , g01024_sj_g77_134_ads , g01024_sj_g77_084_adc , g01024_sj_g77_034_adc
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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03/18/2025
MGI 6.24 		The Jackson Laboratory