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Gene Expression Data
Assay Details
Assay
Reference: J:162220 Magdaleno S, et al., BGEM: an in situ hybridization database of gene expression in the embryonic and adult mouse nervous system. PLoS Biol. 2006 Apr;4(4):e86
Assay type: RNA in situ
MGI Accession ID: MGI:4945473
Gene symbol: Col9a3
Gene name: collagen, type IX, alpha 3
Probe: g00994
Probe preparation: Antisense labelled with P33 RNA
Visualized with: Autoradiography
Results
Specimen g00994 E11.5: embryonic day 11.5 (more )
Structure Level Pattern Image Note
TS19: diencephalon Present Scattered g00994_sj_g94_037_e11 , g00994_sj_g94_087_e11
TS19: midbrain Present Scattered g00994_sj_g94_037_e11 , g00994_sj_g94_087_e11
TS19: hindbrain Present Scattered g00994_sj_g94_037_e11 , g00994_sj_g94_087_e11
TS19: future spinal cord Present Scattered g00994_sj_g94_037_e11 , g00994_sj_g94_087_e11
TS19: telencephalon Present Scattered g00994_sj_g94_037_e11 , g00994_sj_g94_087_e11
Specimen g00994 E15.5: embryonic day 15.5 (more )
Structure Level Pattern Image Note
TS23: cerebellum Present Widespread g00994_sj_g93_087_e15 , g00994_sj_g93_137_e15 , g00994_sj_g93_037_e15
TS23: ganglionic eminence Present Widespread g00994_sj_g93_137_e15 , g00994_sj_g93_037_e15 , g00994_sj_g93_087_e15
TS23: hindbrain Present Widespread g00994_sj_g93_087_e15 , g00994_sj_g93_037_e15 , g00994_sj_g93_137_e15
TS23: hippocampus Present Widespread g00994_sj_g93_087_e15 , g00994_sj_g93_137_e15 , g00994_sj_g93_037_e15
TS23: hypothalamus Present Widespread g00994_sj_g93_137_e15 , g00994_sj_g93_037_e15 , g00994_sj_g93_087_e15
TS23: midbrain Present Widespread g00994_sj_g93_137_e15 , g00994_sj_g93_087_e15 , g00994_sj_g93_037_e15
TS23: neocortex Present Widespread g00994_sj_g93_137_e15 , g00994_sj_g93_037_e15 , g00994_sj_g93_087_e15
TS23: main olfactory bulb Present Widespread g00994_sj_g93_087_e15 , g00994_sj_g93_137_e15 , g00994_sj_g93_037_e15
TS23: retina Present Regionally restricted g00994_sj_g93_137_e15 , g00994_sj_g93_037_e15 , g00994_sj_g93_087_e15
TS23: spinal cord Present Widespread g00994_sj_g93_137_e15 , g00994_sj_g93_037_e15 , g00994_sj_g93_087_e15
Specimen g00994 P7: postnatal day 7 (more )
Structure Level Pattern Image Note
TS28: amygdala Present Widespread g00994_sj_g116_103_p7 , g00994_sj_g116_053_p7 , g00994_sj_g116_003_p7
TS28: basal ganglia Present Regionally restricted g00994_sj_g116_053_p7 , g00994_sj_g116_003_p7 , g00994_sj_g116_103_p7 Expression was region specific and scattered.
TS28: brainstem Present Widespread g00994_sj_g116_103_p7 , g00994_sj_g116_003_p7 , g00994_sj_g116_053_p7
TS28: cerebellum Present Regionally restricted g00994_sj_g116_053_p7 , g00994_sj_g116_103_p7 , g00994_sj_g116_003_p7 Expression was region specific and scattered.
TS28: cerebral cortex Present Widespread g00994_sj_g116_003_p7 , g00994_sj_g116_053_p7 , g00994_sj_g116_103_p7
TS28: hippocampus Present Regionally restricted g00994_sj_g116_103_p7 , g00994_sj_g116_003_p7 , g00994_sj_g116_053_p7 Expression was region specific and scattered.
TS28: hypothalamus Present Widespread g00994_sj_g116_103_p7 , g00994_sj_g116_003_p7 , g00994_sj_g116_053_p7
TS28: meninges Present Regionally restricted g00994_sj_g116_003_p7 , g00994_sj_g116_103_p7 , g00994_sj_g116_053_p7
TS28: midbrain Present Widespread g00994_sj_g116_053_p7 , g00994_sj_g116_103_p7 , g00994_sj_g116_003_p7
TS28: main olfactory bulb Present Widespread g00994_sj_g116_003_p7 , g00994_sj_g116_053_p7 , g00994_sj_g116_103_p7
TS28: retina Present Regionally restricted g00994_sj_g116_053_p7 , g00994_sj_g116_103_p7 , g00994_sj_g116_003_p7
TS28: spinal cord Present Widespread g00994_sj_g116_053_p7 , g00994_sj_g116_103_p7 , g00994_sj_g116_003_p7
TS28: thalamus Present Widespread g00994_sj_g116_103_p7 , g00994_sj_g116_003_p7 , g00994_sj_g116_053_p7
TS28: choroid plexus Strong Regionally restricted g00994_sj_g116_103_p7 , g00994_sj_g116_003_p7 , g00994_sj_g116_053_p7
Specimen g00994 Adult: postnatal day 42 (more )
Structure Level Pattern Image Note
TS28: amygdala Present Widespread g00994_sj_g93_103_ads , g00994_sj_g98_057_adc , g00994_sj_g93_053_ads , g00994_sj_g98_007_adc , g00994_sj_g93_003_ads
TS28: basal ganglia Present Widespread g00994_sj_g98_007_adc , g00994_sj_g93_053_ads , g00994_sj_g98_057_adc , g00994_sj_g93_103_ads , g00994_sj_g93_003_ads
TS28: brainstem Present Widespread g00994_sj_g98_057_adc , g00994_sj_g98_007_adc , g00994_sj_g93_103_ads , g00994_sj_g93_003_ads , g00994_sj_g93_053_ads
TS28: cerebellum Present Regionally restricted g00994_sj_g98_057_adc , g00994_sj_g93_103_ads , g00994_sj_g98_007_adc , g00994_sj_g93_003_ads , g00994_sj_g93_053_ads Expression was region specific and scattered.
TS28: cerebral cortex Present Widespread g00994_sj_g98_007_adc , g00994_sj_g93_103_ads , g00994_sj_g93_003_ads , g00994_sj_g93_053_ads , g00994_sj_g98_057_adc
TS28: choroid plexus Present Regionally restricted g00994_sj_g98_057_adc , g00994_sj_g93_053_ads , g00994_sj_g98_007_adc , g00994_sj_g93_103_ads , g00994_sj_g93_003_ads
TS28: hippocampus Present Widespread g00994_sj_g98_007_adc , g00994_sj_g98_057_adc , g00994_sj_g93_053_ads , g00994_sj_g93_103_ads , g00994_sj_g93_003_ads
TS28: hypothalamus Present Widespread g00994_sj_g93_103_ads , g00994_sj_g98_057_adc , g00994_sj_g93_003_ads , g00994_sj_g98_007_adc , g00994_sj_g93_053_ads
TS28: midbrain Present Widespread g00994_sj_g93_053_ads , g00994_sj_g93_103_ads , g00994_sj_g98_057_adc , g00994_sj_g98_007_adc , g00994_sj_g93_003_ads
TS28: main olfactory bulb Present Widespread g00994_sj_g98_007_adc , g00994_sj_g93_103_ads , g00994_sj_g93_003_ads , g00994_sj_g98_057_adc , g00994_sj_g93_053_ads
TS28: spinal cord Present Widespread g00994_sj_g93_003_ads , g00994_sj_g98_057_adc , g00994_sj_g93_103_ads , g00994_sj_g93_053_ads , g00994_sj_g98_007_adc
TS28: thalamus Present Widespread g00994_sj_g93_053_ads , g00994_sj_g93_003_ads , g00994_sj_g98_057_adc , g00994_sj_g93_103_ads , g00994_sj_g98_007_adc
TS28: meninges Absent g00994_sj_g93_003_ads , g00994_sj_g93_053_ads , g00994_sj_g93_103_ads , g00994_sj_g98_007_adc , g00994_sj_g98_057_adc
TS28: retina Absent g00994_sj_g93_003_ads , g00994_sj_g98_007_adc , g00994_sj_g93_053_ads , g00994_sj_g98_057_adc , g00994_sj_g93_103_ads
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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03/25/2025
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