About   Help   FAQ
Gene Expression Data
Assay Details
Assay
Reference: J:162220 Magdaleno S, et al., BGEM: an in situ hybridization database of gene expression in the embryonic and adult mouse nervous system. PLoS Biol. 2006 Apr;4(4):e86
Assay type: RNA in situ
MGI Accession ID: MGI:4944613
Gene symbol: Ptch1
Gene name: patched 1
Probe: g00023
Probe preparation: Antisense labelled with P33 RNA
Visualized with: Autoradiography
Results
Specimen g00023 E11.5: embryonic day 11.5 (more )
Structure Level Pattern Image Note
TS19: midbrain Present Scattered g00023_sj_g11_054_e11 , g00023_sj_g11_104_e11
TS19: future spinal cord Present Scattered g00023_sj_g11_104_e11 , g00023_sj_g11_054_e11
TS19: hindbrain Strong Regionally restricted g00023_sj_g11_054_e11 , g00023_sj_g11_104_e11 Expression was region specific and scattered.
TS19: telencephalon Strong Regionally restricted g00023_sj_g11_054_e11 , g00023_sj_g11_104_e11 Expression was region specific and scattered.
Specimen g00023 E15.5: embryonic day 15.5 (more )
Structure Level Pattern Image Note
TS23: ganglionic eminence Present Regionally restricted g00023_sj_g11_004_e15 , g00023_sj_g11_054_e15 , g00023_sj_g11_104_e15 Expression was region specific and scattered.
TS23: hindbrain Present Regionally restricted g00023_sj_g11_054_e15 , g00023_sj_g11_104_e15 , g00023_sj_g11_004_e15 Expression was region specific and scattered.
TS23: hypothalamus Present Regionally restricted g00023_sj_g11_054_e15 , g00023_sj_g11_004_e15 , g00023_sj_g11_104_e15 Expression was region specific and scattered.
TS23: midbrain Present Regionally restricted g00023_sj_g11_054_e15 , g00023_sj_g11_104_e15 , g00023_sj_g11_004_e15 Expression was region specific and scattered.
TS23: spinal cord Present Regionally restricted g00023_sj_g11_004_e15 , g00023_sj_g11_104_e15 , g00023_sj_g11_054_e15 Expression was region specific and scattered.
TS23: cerebellum Absent g00023_sj_g11_104_e15 , g00023_sj_g11_004_e15 , g00023_sj_g11_054_e15
TS23: hippocampus Absent g00023_sj_g11_104_e15 , g00023_sj_g11_054_e15 , g00023_sj_g11_004_e15
TS23: neocortex Absent g00023_sj_g11_104_e15 , g00023_sj_g11_054_e15 , g00023_sj_g11_004_e15
TS23: main olfactory bulb Absent g00023_sj_g11_104_e15 , g00023_sj_g11_054_e15 , g00023_sj_g11_004_e15
TS23: retina Absent g00023_sj_g11_054_e15 , g00023_sj_g11_104_e15 , g00023_sj_g11_004_e15
Specimen g00023 P7: postnatal day 7 (more )
Structure Level Pattern Image Note
TS28: amygdala Present Widespread g00023_sj_g22_105_p7 , g00023_sj_g22_055_p7 , g00023_sj_g22_005_p7
TS28: basal ganglia Present Regionally restricted g00023_sj_g22_055_p7 , g00023_sj_g22_005_p7 , g00023_sj_g22_105_p7 Expression was region specific and scattered.
TS28: brainstem Present Widespread g00023_sj_g22_005_p7 , g00023_sj_g22_055_p7 , g00023_sj_g22_105_p7
TS28: cerebellum Present Regionally restricted g00023_sj_g22_055_p7 , g00023_sj_g22_005_p7 , g00023_sj_g22_105_p7 Expression was region specific and scattered.
TS28: cerebral cortex Present Widespread g00023_sj_g22_005_p7 , g00023_sj_g22_105_p7 , g00023_sj_g22_055_p7
TS28: choroid plexus Present Regionally restricted g00023_sj_g22_105_p7 , g00023_sj_g22_055_p7 , g00023_sj_g22_005_p7
TS28: hippocampus Present Regionally restricted g00023_sj_g22_005_p7 , g00023_sj_g22_055_p7 , g00023_sj_g22_105_p7 Expression was region specific and scattered.
TS28: hypothalamus Present Regionally restricted g00023_sj_g22_055_p7 , g00023_sj_g22_105_p7 , g00023_sj_g22_005_p7 Expression was region specific and scattered.
TS28: meninges Present Regionally restricted g00023_sj_g22_005_p7 , g00023_sj_g22_055_p7 , g00023_sj_g22_105_p7
TS28: midbrain Present Widespread g00023_sj_g22_005_p7 , g00023_sj_g22_055_p7 , g00023_sj_g22_105_p7
TS28: main olfactory bulb Present Widespread g00023_sj_g22_005_p7 , g00023_sj_g22_055_p7 , g00023_sj_g22_105_p7
TS28: retina Present Regionally restricted g00023_sj_g22_055_p7 , g00023_sj_g22_105_p7 , g00023_sj_g22_005_p7
TS28: spinal cord Present Widespread g00023_sj_g22_055_p7 , g00023_sj_g22_005_p7 , g00023_sj_g22_105_p7
TS28: thalamus Present Regionally restricted g00023_sj_g22_105_p7 , g00023_sj_g22_005_p7 , g00023_sj_g22_055_p7 Expression was region specific and scattered.
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
Warranty Disclaimer, Privacy Notice, Licensing, & Copyright
Send questions and comments to User Support. 		last database update
12/30/2025
MGI 6.24 		The Jackson Laboratory