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Gene Expression Data
Assay Details
Assay
Reference: J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
Assay type: RNA in situ
MGI Accession ID: MGI:4823906
Gene symbol: Cldn11
Gene name: claudin 11
Probe: MGC clone 14055
Probe preparation: Antisense labelled with digoxigenin RNA
Visualized with: Alkaline phosphatase
Assay notes: Cryosections of fresh frozen material were fixed in 4% paraformaldehyde for 20 min. before further processing. A tyramide-biotin/streptavidin amplification step was included in the in situ hybridization procedure.
Results
Specimen euxassay_006682_01: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon meninges Strong Regionally restricted euxassay_006682_01
TS23: hindlimb digit 4 metatarsal Moderate Regionally restricted euxassay_006682_01
TS23: hindlimb digit 3 metatarsal Moderate Regionally restricted euxassay_006682_01
TS23: hindlimb digit 2 metatarsal Moderate Regionally restricted euxassay_006682_01
TS23: hand mesenchyme Moderate Regionally restricted euxassay_006682_01
TS23: temporal bone petrous part Moderate Regionally restricted euxassay_006682_01
Specimen euxassay_006682_02: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon meninges Strong Regionally restricted euxassay_006682_02
TS23: hindbrain meninges Strong Regionally restricted euxassay_006682_02
TS23: foot mesenchyme Moderate Regionally restricted euxassay_006682_02
TS23: hand mesenchyme Moderate Regionally restricted euxassay_006682_02
TS23: temporal bone petrous part Moderate Regionally restricted euxassay_006682_02
Specimen euxassay_006682_03: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: hindbrain meninges Strong Regionally restricted euxassay_006682_03
TS23: telencephalon meninges Strong Regionally restricted euxassay_006682_03
TS23: foot mesenchyme Moderate Regionally restricted euxassay_006682_03
TS23: temporal bone petrous part Moderate Regionally restricted euxassay_006682_03
Specimen euxassay_006682_04: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: hindbrain meninges Strong Regionally restricted euxassay_006682_04
TS23: midbrain meninges Strong Regionally restricted euxassay_006682_04
TS23: telencephalon meninges Strong Regionally restricted euxassay_006682_04
TS23: maxilla Weak Regionally restricted euxassay_006682_04
Specimen euxassay_006682_05: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: midbrain meninges Strong Regionally restricted euxassay_006682_05
TS23: hindbrain meninges Strong Regionally restricted euxassay_006682_05
TS23: telencephalon meninges Strong Regionally restricted euxassay_006682_05
TS23: diencephalon meninges Strong Regionally restricted euxassay_006682_05
TS23: temporal bone petrous part Moderate Regionally restricted euxassay_006682_05
TS23: mandible Weak Regionally restricted euxassay_006682_05
Specimen euxassay_006682_06: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: midbrain meninges Strong Regionally restricted euxassay_006682_06
TS23: hindbrain meninges Strong Regionally restricted euxassay_006682_06
TS23: telencephalon meninges Strong Regionally restricted euxassay_006682_06
TS23: diencephalon meninges Strong Regionally restricted euxassay_006682_06
TS23: temporal bone petrous part Moderate Regionally restricted euxassay_006682_06
Specimen euxassay_006682_07: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: midbrain meninges Strong Regionally restricted euxassay_006682_07
TS23: hindbrain meninges Strong Regionally restricted euxassay_006682_07
TS23: telencephalon meninges Strong Regionally restricted euxassay_006682_07
TS23: diencephalon meninges Strong Regionally restricted euxassay_006682_07
TS23: spinal cord meninges Strong Regionally restricted euxassay_006682_07
TS23: renal calyx Moderate Regionally restricted euxassay_006682_07
TS23: adrenal cortex Moderate Regionally restricted euxassay_006682_07
TS23: turbinate bone primordium Strong Regionally restricted euxassay_006682_07
TS23: pectoralis minor Moderate Regionally restricted euxassay_006682_07
TS23: pectoralis major Moderate Regionally restricted euxassay_006682_07
TS23: Meckel's cartilage Weak Regionally restricted euxassay_006682_07
TS23: mandible Weak Regionally restricted euxassay_006682_07
Specimen euxassay_006682_08: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: spinal cord meninges Strong Regionally restricted euxassay_006682_08
TS23: midbrain meninges Strong Regionally restricted euxassay_006682_08
TS23: hindbrain meninges Strong Regionally restricted euxassay_006682_08
TS23: diencephalon meninges Strong Regionally restricted euxassay_006682_08
TS23: telencephalon meninges Strong Regionally restricted euxassay_006682_08
TS23: renal calyx Moderate Regionally restricted euxassay_006682_08
TS23: adrenal cortex Moderate Regionally restricted euxassay_006682_08
TS23: turbinate bone primordium Strong Regionally restricted euxassay_006682_08
TS23: pectoralis major Strong Regionally restricted euxassay_006682_08
TS23: pectoralis minor Strong Regionally restricted euxassay_006682_08
TS23: Meckel's cartilage Moderate Regionally restricted euxassay_006682_08
TS23: mandible Weak Regionally restricted euxassay_006682_08
Specimen euxassay_006682_09: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: spinal cord meninges Strong Regionally restricted euxassay_006682_09
TS23: midbrain meninges Strong Regionally restricted euxassay_006682_09
TS23: hindbrain meninges Strong Regionally restricted euxassay_006682_09
TS23: telencephalon meninges Strong Regionally restricted euxassay_006682_09
TS23: diencephalon meninges Strong Regionally restricted euxassay_006682_09
TS23: ureter Moderate Regionally restricted euxassay_006682_09
TS23: adrenal cortex Moderate Regionally restricted euxassay_006682_09
TS23: turbinate bone primordium Strong Regionally restricted euxassay_006682_09
TS23: pectoralis major Strong Regionally restricted euxassay_006682_09
TS23: pectoralis minor Strong Regionally restricted euxassay_006682_09
TS23: Meckel's cartilage Moderate Regionally restricted euxassay_006682_09
TS23: mandible Weak Regionally restricted euxassay_006682_09
Specimen euxassay_006682_10: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: spinal cord meninges Strong Regionally restricted euxassay_006682_10
TS23: midbrain meninges Strong Regionally restricted euxassay_006682_10
TS23: hindbrain meninges Strong Regionally restricted euxassay_006682_10
TS23: telencephalon meninges Strong Regionally restricted euxassay_006682_10
TS23: diencephalon meninges Strong Regionally restricted euxassay_006682_10
TS23: ureter Moderate Regionally restricted euxassay_006682_10
TS23: turbinate bone primordium Strong Regionally restricted euxassay_006682_10
TS23: pectoralis major Strong Regionally restricted euxassay_006682_10
TS23: pectoralis minor Strong Regionally restricted euxassay_006682_10
TS23: Meckel's cartilage Moderate Regionally restricted euxassay_006682_10
TS23: mandible Moderate Regionally restricted euxassay_006682_10
Specimen euxassay_006682_11: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: spinal cord meninges Strong Regionally restricted euxassay_006682_11
TS23: midbrain meninges Strong Regionally restricted euxassay_006682_11
TS23: hindbrain meninges Strong Regionally restricted euxassay_006682_11
TS23: telencephalon meninges Strong Regionally restricted euxassay_006682_11
TS23: diencephalon meninges Strong Regionally restricted euxassay_006682_11
TS23: turbinate bone primordium Strong Regionally restricted euxassay_006682_11
TS23: pectoralis minor Strong Regionally restricted euxassay_006682_11
TS23: pectoralis major Strong Regionally restricted euxassay_006682_11
Specimen euxassay_006682_12: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: spinal cord meninges Strong Regionally restricted euxassay_006682_12
TS23: midbrain meninges Strong Regionally restricted euxassay_006682_12
TS23: telencephalon meninges Strong Regionally restricted euxassay_006682_12
TS23: diencephalon meninges Strong Regionally restricted euxassay_006682_12
TS23: turbinate bone primordium Strong Regionally restricted euxassay_006682_12
TS23: esophagus epithelium Moderate Regionally restricted euxassay_006682_12
TS23: pectoralis major Strong Regionally restricted euxassay_006682_12
TS23: pectoralis minor Strong Regionally restricted euxassay_006682_12
Specimen euxassay_006682_13: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: spinal cord meninges Strong Regionally restricted euxassay_006682_13
TS23: midbrain meninges Strong Regionally restricted euxassay_006682_13
TS23: hindbrain meninges Strong Regionally restricted euxassay_006682_13
TS23: telencephalon meninges Strong Regionally restricted euxassay_006682_13
TS23: diencephalon meninges Strong Regionally restricted euxassay_006682_13
TS23: turbinate bone primordium Strong Regionally restricted euxassay_006682_13
TS23: esophagus epithelium Moderate Regionally restricted euxassay_006682_13
TS23: posterior naris Strong Regionally restricted euxassay_006682_13
TS23: Meckel's cartilage Moderate Regionally restricted euxassay_006682_13
TS23: trachea Strong Regionally restricted euxassay_006682_13
TS23: mandible Moderate Regionally restricted euxassay_006682_13
Specimen euxassay_006682_14: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: spinal cord meninges Strong Regionally restricted euxassay_006682_14
TS23: midbrain meninges Strong Regionally restricted euxassay_006682_14
TS23: hindbrain meninges Strong Regionally restricted euxassay_006682_14
TS23: telencephalon meninges Strong Regionally restricted euxassay_006682_14
TS23: diencephalon meninges Strong Regionally restricted euxassay_006682_14
TS23: ureter Moderate Regionally restricted euxassay_006682_14
TS23: turbinate bone primordium Strong Regionally restricted euxassay_006682_14
TS23: pectoralis major Moderate Regionally restricted euxassay_006682_14
TS23: pectoralis minor Moderate Regionally restricted euxassay_006682_14
Specimen euxassay_006682_15: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: spinal cord meninges Strong Regionally restricted euxassay_006682_15
TS23: midbrain meninges Strong Regionally restricted euxassay_006682_15
TS23: hindbrain meninges Strong Regionally restricted euxassay_006682_15
TS23: telencephalon meninges Strong Regionally restricted euxassay_006682_15
TS23: diencephalon meninges Strong Regionally restricted euxassay_006682_15
TS23: ureter Moderate Regionally restricted euxassay_006682_15
TS23: turbinate bone primordium Strong Regionally restricted euxassay_006682_15
TS23: pectoralis major Strong Regionally restricted euxassay_006682_15
TS23: pectoralis minor Strong Regionally restricted euxassay_006682_15
TS23: trachea Strong Regionally restricted euxassay_006682_15
Specimen euxassay_006682_16: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: spinal cord meninges Strong Regionally restricted euxassay_006682_16
TS23: midbrain meninges Strong Regionally restricted euxassay_006682_16
TS23: hindbrain meninges Strong Regionally restricted euxassay_006682_16
TS23: telencephalon meninges Strong Regionally restricted euxassay_006682_16
TS23: diencephalon meninges Strong Regionally restricted euxassay_006682_16
TS23: ureter Moderate Regionally restricted euxassay_006682_16
TS23: adrenal cortex Moderate Regionally restricted euxassay_006682_16
TS23: turbinate bone primordium Strong Regionally restricted euxassay_006682_16
TS23: pectoralis major Strong Regionally restricted euxassay_006682_16
TS23: pectoralis minor Strong Regionally restricted euxassay_006682_16
Specimen euxassay_006682_17: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: spinal cord meninges Strong Regionally restricted euxassay_006682_17
TS23: midbrain meninges Strong Regionally restricted euxassay_006682_17
TS23: hindbrain meninges Strong Regionally restricted euxassay_006682_17
TS23: telencephalon meninges Strong Regionally restricted euxassay_006682_17
TS23: diencephalon meninges Strong Regionally restricted euxassay_006682_17
TS23: renal calyx Moderate Regionally restricted euxassay_006682_17
TS23: adrenal cortex Moderate Regionally restricted euxassay_006682_17
TS23: turbinate bone primordium Strong Regionally restricted euxassay_006682_17
TS23: posterior naris Weak Regionally restricted euxassay_006682_17
TS23: pectoralis minor Moderate Regionally restricted euxassay_006682_17
TS23: pectoralis major Moderate Regionally restricted euxassay_006682_17
TS23: Meckel's cartilage Moderate Regionally restricted euxassay_006682_17
TS23: mandible Weak Regionally restricted euxassay_006682_17
Specimen euxassay_006682_18: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: spinal cord meninges Strong Regionally restricted euxassay_006682_18
TS23: midbrain meninges Strong Regionally restricted euxassay_006682_18
TS23: hindbrain meninges Strong Regionally restricted euxassay_006682_18
TS23: telencephalon meninges Strong Regionally restricted euxassay_006682_18
TS23: diencephalon meninges Strong Regionally restricted euxassay_006682_18
TS23: foot mesenchyme Strong Regionally restricted euxassay_006682_18
TS23: renal calyx Moderate Regionally restricted euxassay_006682_18
TS23: adrenal cortex Moderate Regionally restricted euxassay_006682_18
TS23: turbinate bone primordium Strong Regionally restricted euxassay_006682_18
TS23: pectoralis minor Moderate Regionally restricted euxassay_006682_18
TS23: pectoralis major Moderate Regionally restricted euxassay_006682_18
TS23: Meckel's cartilage Moderate Regionally restricted euxassay_006682_18
TS23: mandible Weak Regionally restricted euxassay_006682_18
Specimen euxassay_006682_19: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: spinal cord meninges Strong Regionally restricted euxassay_006682_19
TS23: midbrain meninges Strong Regionally restricted euxassay_006682_19
TS23: hindbrain meninges Strong Regionally restricted euxassay_006682_19
TS23: telencephalon meninges Strong Regionally restricted euxassay_006682_19
TS23: diencephalon meninges Strong Regionally restricted euxassay_006682_19
TS23: foot mesenchyme Strong Regionally restricted euxassay_006682_19
TS23: pectoralis minor Moderate Regionally restricted euxassay_006682_19
TS23: pectoralis major Moderate Regionally restricted euxassay_006682_19
TS23: Meckel's cartilage Moderate Regionally restricted euxassay_006682_19
TS23: mandible Moderate Regionally restricted euxassay_006682_19
Specimen euxassay_006682_20: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: midbrain meninges Strong Regionally restricted euxassay_006682_20
TS23: hindbrain meninges Strong Regionally restricted euxassay_006682_20
TS23: telencephalon meninges Strong Regionally restricted euxassay_006682_20
TS23: hindlimb digit 4 metatarsal Strong Regionally restricted euxassay_006682_20
TS23: hindlimb digit 3 metatarsal Strong Regionally restricted euxassay_006682_20
TS23: hindlimb digit 2 metatarsal Strong Regionally restricted euxassay_006682_20
TS23: pectoralis minor Moderate Regionally restricted euxassay_006682_20
TS23: pectoralis major Moderate Regionally restricted euxassay_006682_20
TS23: temporal bone petrous part Moderate Regionally restricted euxassay_006682_20
TS23: mandible Moderate Regionally restricted euxassay_006682_20
TS23: maxilla Moderate Regionally restricted euxassay_006682_20
Specimen euxassay_006682_21: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: hindbrain meninges Strong Regionally restricted euxassay_006682_21
TS23: telencephalon meninges Strong Regionally restricted euxassay_006682_21
TS23: hindlimb digit 2 metatarsal Moderate Regionally restricted euxassay_006682_21
TS23: hindlimb digit 3 metatarsal Moderate Regionally restricted euxassay_006682_21
TS23: temporal bone petrous part Moderate Regionally restricted euxassay_006682_21
TS23: mandible Weak Regionally restricted euxassay_006682_21
TS23: maxilla Moderate Regionally restricted euxassay_006682_21
Specimen euxassay_006682_22: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon meninges Strong Regionally restricted euxassay_006682_22
TS23: temporal bone petrous part Strong Regionally restricted euxassay_006682_22
Specimen euxassay_006682_23: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon meninges Strong Regionally restricted euxassay_006682_23
TS23: hand mesenchyme Moderate Regionally restricted euxassay_006682_23
TS23: temporal bone petrous part Strong Regionally restricted euxassay_006682_23
Specimen euxassay_006682_24: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon meninges Strong Regionally restricted euxassay_006682_24
TS23: hand mesenchyme Moderate Regionally restricted euxassay_006682_24
TS23: temporal bone petrous part Strong Regionally restricted euxassay_006682_24
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Send questions and comments to User Support. 		last database update
03/18/2025
MGI 6.24 		The Jackson Laboratory