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Gene Expression Data
Assay Details
Assay
Reference: J:91257 Gray PA, et al., Mouse Brain Organization Revealed Through Direct Genome-Scale TF Expression Analysis. Science. 2004 Dec 24;306(5705):2255-2257
Assay type: RNA in situ
MGI Accession ID: MGI:3508508
Gene symbol: Rarb
Gene name: retinoic acid receptor, beta
Probe: MTF#1713
Probe preparation: Antisense labelled with digoxigenin RNA
Visualized with: Alkaline phosphatase
Assay notes: Additional electronic submission not included in Supplemental Table 4 of the publication. Results obtained using this probe were the same as probe MTF#98 (MGI:3505986).
Results
Specimen 1: embryonic day 13.5 (more )
Structure Level Pattern Image Note
TS21: head Present MTF# E 1713 Image Expression was detected in neural and non-neural tissue.
TS21: central nervous system Present Single cells MTF# E 1713 Image Expression was detected in some cells.
TS21: cerebral cortex Absent MTF# E 1713 Image
TS21: corpus striatum Present Single cells MTF# E 1713 Image Expression was detected in some cells.
TS21: thalamus Absent MTF# E 1713 Image
TS21: hypothalamus Absent MTF# E 1713 Image
TS21: midbrain Absent MTF# E 1713 Image
TS21: hindbrain Absent MTF# E 1713 Image
TS21: spinal cord Present Single cells MTF# E 1713 Image Expression was detected in some cells.
TS21: cranial ganglion Absent MTF# E 1713 Image
TS21: dorsal root ganglion Absent MTF# E 1713 Image
TS21: brain ventricular layer Absent MTF# E 1713 Image
TS21: retina Absent MTF# E 1713 Image
TS21: ear Absent MTF# E 1713 Image The tissue was inner ear and ear structures.
TS21: olfactory lobe Present Single cells MTF# E 1713 Image The tissue was olfactory epithelium and/or bulb. Expression was detected in some cells.
Specimen 2: postnatal newborn (more )
Structure Level Pattern Image Note
TS27: head Present Regionally restricted Expression was neural specific.
TS27: central nervous system Present Single cells Expression was detected in some cells.
TS27: cerebral cortex Absent
TS27: corpus striatum Present Single cells Expression was detected in some cells.
TS27: thalamus Absent
TS27: hypothalamus Absent
TS27: midbrain Absent
TS27: cerebellum Absent
TS27: hindbrain Absent
TS27: spinal cord Absent
TS27: cranial ganglion Absent
TS27: dorsal root ganglion Absent
TS27: brain ventricular layer Absent
TS27: retina Absent
TS27: ear Absent The tissue was inner ear and ear structures.
TS27: main olfactory bulb Absent The tissue was olfactory epithelium and/or bulb.
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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03/25/2025
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