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Gene Expression Data
Assay Details
Assay
Reference: J:16386 Echelard Y, et al., Sonic hedgehog, a member of a family of putative signaling molecules, is implicated in the regulation of CNS polarity. Cell. 1993 Dec 31;75(7):1417-30
Assay type: RNA in situ
MGI Accession ID: MGI:2449793
Gene symbol: Shh
Gene name: sonic hedgehog
Probe: Shh cDNA3
Probe preparation: Antisense labelled with S35 RNA
Visualized with: Autoradiography
Assay notes: It is possible that another Shh probe (MGI:1929246) was used in this assay.
Results
Specimen 3G: embryonic day 9.5 (more )
Structure Level Pattern Image Note
TS15: diencephalon Present Regionally restricted 3G Expression was detected in 2 ventrolateral strips and absent from the midline.
TS15: future hindbrain Present Regionally restricted 3G Expression was detected in the floor plate.

Specimen 3I: embryonic day 9.5 (more )
Structure Level Pattern Image Note
TS15: diencephalon Present Regionally restricted 3I Expression was detected in the ventral midline at the rostral limit of the forebrain.
TS15: branchial arch endoderm Present Regionally restricted 3I Expression was detected in the pharyngeal endoderm.
TS15: future hindbrain Present Regionally restricted 3I Expression was detected in the floor plate.
TS15: notochord Present 3I

Specimen 3K: embryonic day 9.5 (more )
Structure Level Pattern Image Note
TS15: hindgut Present Regionally restricted 3K Expression was restricted ventrally.
TS15: notochord Present 3K

Specimen 4B, 4C: embryonic day 10.0 (more )
Structure Level Pattern Image Note
TS16: neural tube floor plate Present 4B
TS16: notochord Present 4B
TS16: forelimb bud mesenchyme Present Regionally restricted 4C , 4B Expression was detected posteriorly.
TS16: future brain Present Regionally restricted 4B Expression was detected in the floorplate.

Specimen 4F: embryonic day 11.5 (more )
Structure Level Pattern Image Note
TS19: gut Present 4F
TS19: neural tube floor plate Present 4F
TS19: notochord Present 4F
TS19: footplate Present Regionally restricted 4F Expression was detected distally and posteriorly.

Specimen Not Shown: embryonic day 11.5 (more )
Structure Level Pattern Image Note
TS19: forelimb bud Absent

Specimen Not Shown: embryonic day 10.5 (more )
Structure Level Pattern Image Note
TS17: forelimb bud mesenchyme Strong Regionally restricted Expression was posterior and distal.
TS17: hindlimb bud mesenchyme Strong Regionally restricted Expression was posterior and distal.

Specimen Not Shown: embryonic day 12.5 (more )
Structure Level Pattern Image Note
TS20: limb Absent


Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
01/28/2026
MGI 6.24
The Jackson Laboratory