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Gene Expression Data
Assay Details
Assay
Reference: J:36832 Stoykova A, et al., Forebrain patterning defects in Small eye mutant mice. Development. 1996 Nov;122(11):3453-65
Assay type: RNA in situ
MGI Accession ID: MGI:2148108
Gene symbol: Pax6
Gene name: paired box 6
Probe: Pax6 probe
Probe preparation: Antisense labelled with S35 RNA
Visualized with: Autoradiography
Results
Specimen 1A: embryonic day 12.5 (more )
Structure Level Pattern Image Note
TS20: forebrain Present Regionally restricted 1_1/A Expression in two large domains, and in region between domains ('optoeminential zone').
TS20: telencephalon Present Regionally restricted 1_1/A Telencephalic domain.
TS20: diencephalon Present Regionally restricted 1_1/A Thalamo-hypothalamic domain.

Specimen 1C: embryonic day 12.5; Pax6Sey/Pax6Sey (more )
Structure Level Pattern Image Note
TS20: forebrain Present Regionally restricted 1_1'/C

Specimen 1E: embryonic day 12.5 (more )
Structure Level Pattern Image Note
TS20: forebrain Present Regionally restricted 1_2/E Expression in two large domains, and in region between domains ('optoeminential zone').
TS20: telencephalon Present Regionally restricted 1_2/E Telencephalic domain.
TS20: diencephalon Present Regionally restricted 1_2/E Thalamo-hypothalamic domain.
TS20: hypothalamus Present Regionally restricted 1_2/E Domains include regions of ventral thalamus (VT), including the dorsalmost region, and hypothalamic cell cord (HCC).

Specimen 1G: embryonic day 12.5; Pax6Sey/Pax6Sey (more )
Structure Level Pattern Image Note
TS20: forebrain Present Regionally restricted 1_2'/G
TS20: hypothalamus Present Regionally restricted 1_2'/G Expression in the ventricular zone of the supraoptic paraventricular (SPV) area.

Specimen 1I: embryonic day 12.5 (more )
Structure Level Pattern Image Note
TS20: forebrain Present Regionally restricted 1_3/I Expression in two large domains, and in region between domains ('optoeminential zone').
TS20: telencephalon Present Regionally restricted 1_3/I Telencephalic domain.
TS20: diencephalon Present Regionally restricted 1_3/I Thalamo-hypothalamic domain.
TS20: hypothalamus Present Regionally restricted 1_3/I Domains include regions of ventral thalamus (VT), including the dorsalmost region, and hypothalamic cell cord (HCC).
TS20: thalamus Present Regionally restricted 1_3/I Domains include regions of ventral thalamus (VT), including the dorsalmost region, and hypothalamic cell cord (HCC).

Specimen 1K: embryonic day 12.5; Pax6Sey/Pax6Sey (more )
Structure Level Pattern Image Note
TS20: forebrain Present Regionally restricted 1_3'/K

Specimen 1M: embryonic day 12.5 (more )
Structure Level Pattern Image Note
TS20: forebrain Present Regionally restricted 1_4/M Expression in two large domains, and in region between domains ('optoeminential zone').
TS20: diencephalon Present Regionally restricted 1_4/M Thalamo-hypothalamic domain.
TS20: hypothalamus Present Regionally restricted 1_4/M Domains include regions of ventral thalamus (VT), including the dorsalmost region, and hypothalamic cell cord (HCC).
TS20: thalamus Present Regionally restricted 1_4/M Domains include regions of ventral thalamus (VT), including the dorsalmost region, and hypothalamic cell cord (HCC).

Specimen 1O: embryonic day 12.5; Pax6Sey/Pax6Sey (more )
Structure Level Pattern Image Note
TS20: forebrain Present Regionally restricted 1_4'/O
TS20: thalamus Present Regionally restricted 1_4'/O Specific labelling in eminentia thalami (EMT) primordia and very rostrodorsal part of ventral thalamus.

Specimen 2A: embryonic day 12.5 (more )
Structure Level Pattern Image Note
TS20: forebrain Present Regionally restricted 2A Expression in two large domains, and in region between domains ('optoeminential zone').
TS20: telencephalon Present Regionally restricted 2A Telencephalic domain.

Specimen 2D: embryonic day 12.5; Pax6Sey/Pax6Sey (more )
Structure Level Pattern Image Note
TS20: forebrain Present Regionally restricted 2D

Specimen 2G: embryonic day 12.5 (more )
Structure Level Pattern Image Note
TS20: forebrain Present Regionally restricted 2G Expression in two large domains, and in region between domains ('optoeminential zone').
TS20: telencephalon Present Regionally restricted 2G Telencephalic domain.
TS20: diencephalon Present Regionally restricted 2G Thalamo-hypothalamic domain.
TS20: thalamus Present Regionally restricted 2G Domains include regions of ventral thalamus (VT), including the dorsalmost region, and hypothalamic cell cord (HCC).

Specimen 2J: embryonic day 12.5; Pax6Sey/Pax6Sey (more )
Structure Level Pattern Image Note
TS20: forebrain Present Regionally restricted 2J
TS20: thalamus Present Regionally restricted 2J Specific labelling in eminentia thalami (EMT) primordia and very rostrodorsal part of ventral thalamus.

Specimen 2M: embryonic day 12.5 (more )
Structure Level Pattern Image Note
TS20: forebrain Present Regionally restricted 2M Expression in two large domains, and in region between domains ('optoeminential zone').
TS20: diencephalon Present Regionally restricted 2M Thalamo-hypothalamic domain.
TS20: thalamus Present Regionally restricted 2M Domains include regions of ventral thalamus (VT), including the dorsalmost region, and hypothalamic cell cord (HCC).

Specimen 2P: embryonic day 12.5; Pax6Sey/Pax6Sey (more )
Structure Level Pattern Image Note
TS20: forebrain Present Regionally restricted 2P
TS20: thalamus Present Regionally restricted 2P Specific labelling in eminentia thalami (EMT) primordia and very rostrodorsal part of ventral thalamus.
TS20: hypothalamus Present Regionally restricted 2P Expression in the ventricular zone of the supraoptic paraventricular (SPV) area.

Specimen 2S: embryonic day 12.5 (more )
Structure Level Pattern Image Note
TS20: forebrain Present Regionally restricted 2S Expression in two large domains, and in region between domains ('optoeminential zone').
TS20: hypothalamus Present Regionally restricted 2S Domains include regions of ventral thalamus (VT), including the dorsalmost region, and hypothalamic cell cord (HCC).
TS20: thalamus Present Regionally restricted 2S Domains include regions of ventral thalamus (VT), including the dorsalmost region, and hypothalamic cell cord (HCC).

Specimen 2V: embryonic day 12.5; Pax6Sey/Pax6Sey (more )
Structure Level Pattern Image Note
TS20: forebrain Present Regionally restricted 2V
TS20: thalamus Present Regionally restricted 2V Specific labelling in eminentia thalami (EMT) primordia and very rostrodorsal part of ventral thalamus.

Specimen 3A: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS22: forebrain Present Regionally restricted 3A Expression in the paraventricular nucleus (PA) and a stream of cells forming a part of the ventral lateral geniculate body (VLG).

Specimen 3C: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS22: forebrain Present Regionally restricted 3C Expression in the paraventricular nucleus (PA) and a stream of cells forming a part of the ventral lateral geniculate body (VLG).
TS22: thalamus Present Regionally restricted 3C No expression in the central part of the ventral thalamus (zone incerta, ZI; reticular thalamic nuclei, RT).

Specimen 3E: embryonic day 14.5; Pax6Sey/Pax6Sey (more )
Structure Level Pattern Image Note
TS22: telencephalon Present Regionally restricted 3E
TS22: diencephalon Present Regionally restricted 3E Extensive labelling only in lateral diencephalic regions.
TS22: thalamus Strong Regionally restricted 3E Strong expression in the internal germinative layer (IGL) of the dorsal thalamus.

Specimen 3G: embryonic day 14.5; Pax6Sey/Pax6Sey (more )
Structure Level Pattern Image Note
TS22: telencephalon Present Regionally restricted 3G
TS22: diencephalon Present Regionally restricted 3G Extensive labelling only in lateral diencephalic regions.
TS22: thalamus Strong Regionally restricted 3G

Specimen 4A: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS22: forebrain Present Regionally restricted 4A

Specimen 4C: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS22: forebrain Present Regionally restricted 4C
TS22: telencephalon Strong Regionally restricted 4C Strong expression in the entopeduncular nucleus (EP).

Specimen 4E: embryonic day 14.5; Pax6Sey/Pax6Sey (more )
Structure Level Pattern Image Note
TS22: telencephalon Present Regionally restricted 4E
TS22: diencephalon Present Regionally restricted 4E Extensive labelling only in lateral diencephalic regions.
TS22: thalamus Strong Regionally restricted 4E Strong expression in the internal germinative layer (IGL) of the dorsal thalamus

Specimen 4G: embryonic day 14.5; Pax6Sey/Pax6Sey (more )
Structure Level Pattern Image Note
TS22: telencephalon Present Regionally restricted 4G
TS22: diencephalon Present Regionally restricted 4G Extensive labelling only in lateral diencephalic regions.
TS22: thalamus Strong Regionally restricted 4G Strong expression in the internal germinative layer (IGL) of the dorsal thalamus.

Specimen 5A: embryonic day 18.5 (more )
Structure Level Pattern Image Note
TS26: forebrain Present Regionally restricted 5A Expression within dorsolateral ventricular zone and subventricular zone
TS26: telencephalon Present Regionally restricted 5A Background levels in basal rostral telencephalon. Specific hybridization in entopiriform nucleus, piriform cortex and olfactory tubercles.
TS26: diencephalon Strong Regionally restricted 5A Expression in rostral diencephalon; strong hybridization in paraventricular nucleus (PA) and entopedundular nuclei (EP). Ends in a subregion of the ventral lateral geniculate body (VLG).
TS26: thalamus Present Regionally restricted 5A Expression in ventral thalamus (VT).

Specimen 5C: embryonic day 18.5 (more )
Structure Level Pattern Image Note
TS26: forebrain Present Regionally restricted 5C Expression within dorsolateral ventricular zone and subventricular zone
TS26: telencephalon Present Regionally restricted 5C Background levels in basal rostral telencephalon. Specific hybridization in entopiriform nucleus, piriform cortex and olfactory tubercles.
TS26: diencephalon Strong Regionally restricted 5C Expression in rostral diencephalon; strong hybridization in paraventricular nucleus (PA) and entopedundular nuclei (EP). Ends in a subregion of the ventral lateral geniculate body (VLG).
TS26: thalamus Present Regionally restricted 5C Expression in ventral thalamus (VT).

Specimen 5E: embryonic day 18.5 (more )
Structure Level Pattern Image Note
TS26: forebrain Present Regionally restricted 5E Expression within dorsolateral ventricular zone and subventricular zone
TS26: telencephalon Present Regionally restricted 5E Background levels in basal rostral telencephalon. Specific hybridization in entopiriform nucleus, piriform cortex and olfactory tubercles.
TS26: diencephalon Strong Regionally restricted 5E Expression in rostral diencephalon; strong hybridization in paraventricular nucleus (PA) and entopedundular nuclei (EP). Ends in a subregion of the ventral lateral geniculate body (VLG).
TS26: thalamus Present Regionally restricted 5E Expression in ventral thalamus (VT).

Specimen 5G: embryonic day 18.5; Pax6Sey/Pax6Sey (more )
Structure Level Pattern Image Note
TS26: forebrain Present Regionally restricted 5G
TS26: telencephalon Strong Regionally restricted 5G Strong labelling in entire ventricular zone and subventricular zone of telencephalon, including striatal and neocortical regions.

Specimen 5I: embryonic day 18.5; Pax6Sey/Pax6Sey (more )
Structure Level Pattern Image Note
TS26: forebrain Present Regionally restricted 5I
TS26: telencephalon Strong Regionally restricted 5I Strong labelling in entire ventricular zone and subventricular zone of telencephalon, including striatal and neocortical regions.

Specimen 5K: embryonic day 18.5; Pax6Sey/Pax6Sey (more )
Structure Level Pattern Image Note
TS26: forebrain Present Regionally restricted 5K
TS26: telencephalon Strong Regionally restricted 5K Strong labelling in entire ventricular zone and subventricular zone of telencephalon, including striatal and neocortical regions.

Specimen 6E: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS22: forebrain Present Regionally restricted 6E

Specimen 6G: embryonic day 14.5; Pax6Sey/Pax6Sey (more )
Structure Level Pattern Image Note
TS22: telencephalon Present Regionally restricted 6G
TS22: diencephalon Present Regionally restricted 6G Extensive labelling only in lateral diencephalic regions.


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last database update
03/18/2025
MGI 6.24
The Jackson Laboratory