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Phenotypes associated with this allele
Allele Symbol
Allele Name
Allele ID
Syngap1+
wild type
MGI:3049765
Summary 9 genotypes
Jump to Allelic Composition Genetic Background Genotype ID
ht1
Syngap1tm1Grnt/Syngap1+ involves: 129P2/OlaHsd * MF1 MGI:3581300
ht2
Syngap1tm1Rlh/Syngap1+ involves: 129S1/Sv * 129X1/SvJ MGI:5469876
ht3
Syngap1tm1Rlh/Syngap1+ involves: 129S1/Sv * 129X1/SvJ * C57BL/6 MGI:3576467
ht4
Syngap1tm1Rlh/Syngap1+ involves: 129S/SvEv * 129S1/Sv * 129X1/SvJ * C57BL/6J MGI:5485349
cn5
Gt(ROSA)26Sortm9(CAG-tdTomato)Hze/Gt(ROSA)26Sor+
Syngap1tm1.1Geno/Syngap1+
involves: 129S2/SvPas * 129S6/SvEvTac * C57BL/6 * C57BL/6NCr MGI:5469877
cn6
Syngap1tm2Geno/Syngap1+
Tg(CAG-cre/Esr1*)5Amc/0
involves: 129S2/SvPas * C57BL/6 * CBA MGI:5469879
cx7
Dlg4tm1Grnt/Dlg4tm1Grnt
Syngap1tm1Grnt/Syngap1+
involves: 129P2/OlaHsd * MF1 MGI:3581308
cx8
Hrastm1Grnt/Hrastm1Grnt
Syngap1tm1Grnt/Syngap1+
involves: 129P2/OlaHsd * MF1 MGI:3581305
cx9
Syngap1tm2Geno/Syngap1+
Tg(CAG-cre/Esr1*)5Amc/0
involves: 129S2/SvPas * C57BL/6 * CBA MGI:5469878


Genotype
MGI:3581300
ht1
Allelic
Composition
Syngap1tm1Grnt/Syngap1+
Genetic
Background
involves: 129P2/OlaHsd * MF1
Find Mice Using the International Mouse Strain Resource (IMSR)
Mouse lines carrying:
Syngap1tm1Grnt mutation (0 available); any Syngap1 mutation (50 available)
phenotype observed in females
phenotype observed in males
N normal phenotype
nervous system
• reduced long term potentiation in the hippocampal CA1 region (across a wide range of LTP induction protocols) in the absence of any detectable alteration in basal synaptic transmission and NMDAR-mediated synaptic currents

behavior/neurological
• heterozygotes initially learn slower than wildtype in spatial water maze tests, however with further training, exhibit normal learning indicating unimpaired long-term memory




Genotype
MGI:5469876
ht2
Allelic
Composition
Syngap1tm1Rlh/Syngap1+
Genetic
Background
involves: 129S1/Sv * 129X1/SvJ
Find Mice Using the International Mouse Strain Resource (IMSR)
Mouse lines carrying:
Syngap1tm1Rlh mutation (1 available); any Syngap1 mutation (50 available)
phenotype observed in females
phenotype observed in males
N normal phenotype
nervous system
N
• at P14, mice exhibit normal medial perforant path release probability and intrinsic spiking of dentate gyrus neurons
• at P14, dentate gyrus neuron dendritic trees exhibit a decrease in the spatial volume compared with in wild-type mice
• larger spines by P14 and persisting into adulthood
• more mushroom-type spines and fewer stubby spines beginning in the second postnatal week
• spines are less motile at P14
• some spines exhibit a spontaneous increase in head volume
• however, spine density is normal
• photosimulation-evoked signals originating in the dentate gyrus are amplified as they spread through the hippocampus unlike in wild-type mice
• synaptic transmission in the Schaeffer Collateral pathway in the CA1 is strong during early development compared with wild-type mice
• however, synaptic transmission in the Schaeffer Collateral pathway in the CA1 in adult mice is normal
• by P14, field excitatory postsynaptic potential is increased compared to in control mice
• however, synaptic function at P9, P21 and later is normal
• at P14, mice exhibit an increase in the ratio of AMPA/NMDA currents in dentate gyrus granule neurons compared with wild-type mice
• however, NMDAR-evoked synaptic transmission is normal
• increased sensitivity at P14
• increased amplitude and frequency at P14
• however, both are normal at P21
• increased frequency and amplitude in the dentate gyrus neurons

behavior/neurological
N
• mice exhibit normal contextual fear memory
• mice are unable to discriminate between two contexts during contextual fear training unlike wild-type mice
• in an open field at P14




Genotype
MGI:3576467
ht3
Allelic
Composition
Syngap1tm1Rlh/Syngap1+
Genetic
Background
involves: 129S1/Sv * 129X1/SvJ * C57BL/6
Find Mice Using the International Mouse Strain Resource (IMSR)
Mouse lines carrying:
Syngap1tm1Rlh mutation (1 available); any Syngap1 mutation (50 available)
phenotype observed in females
phenotype observed in males
N normal phenotype
nervous system
• long term potentiation induced by TBS was significantly decreased in the CA1 region of hippocampal slices, however there was no difference in the magnitude of long term depression




Genotype
MGI:5485349
ht4
Allelic
Composition
Syngap1tm1Rlh/Syngap1+
Genetic
Background
involves: 129S/SvEv * 129S1/Sv * 129X1/SvJ * C57BL/6J
Find Mice Using the International Mouse Strain Resource (IMSR)
Mouse lines carrying:
Syngap1tm1Rlh mutation (1 available); any Syngap1 mutation (50 available)
phenotype observed in females
phenotype observed in males
N normal phenotype
behavior/neurological
• mutants exhibit reduced freezing in response to a conditioning tone previously associated with a mild footshock, however the freezing response is intact as behavioral responses to a fear-associated context are normal
• activity during conditioning tone presentation is normal, however activity is elevated during tone presentation in the retrieval test
• although mutants are able to learn forced alteration rule in the automated eight-arm radial maze, mutants show a time-dependent decrease in nonmatching performance, indicating spatial working memory deficits
• mutants exhibit random vectors through the open field unlike wild-type mice that primarily run around the outside chamber and spend most of the time in the corners, indicating abnormal anxiety levels
• mutants are more likely to venture into the center of the field during the first few minutes of the test session, indicating decreased thigmotaxis
• in the elevated plus maze, mutants spend less time in the closed arm and more time in the open arm compared to wild-type mice, indicating decreased anxiety levels
• mutants respond more strongly to the 120 dB stimulus then wild-type mice
• mutants show enhanced startle responses at the highest amplitudes (loudest pulses)
• mutants exhibit elevated horizontal activity compared to wild-type littermates and this behavior is nonhabituating over repeated trials
• juvenile, newly weaned mutants also exhibit increased horizontal activity
• antipsychotic drug clozapine ameliorates the persistent hyperactivity
• the NMDAR antagonist, MK-801, has a reduced effect on hyperactivity in mutants compared to wild-type mice
• mutants show an increase in stereotypies in the open field test compared to wild-type littermates, most pronounced at the beginning of a 2 hour test session
• mutants show increased stereotypic behavior in 30 minute open field trials over 5 consecutive days, indicating behavior is nonhabituating
• mutants are unable to distinguish between familiar and novel conspecifics compared to wild-type mice which spend more time with the novel conspecifics
• in a test for social isolation, mutants spend more time in the center compartment (a space that is separated from the other mice) than in ends of chamber where novel conspecifics were placed, indicating a preference for social isolation

nervous system

Mouse Models of Human Disease
DO ID OMIM ID(s) Ref(s)
schizophrenia DOID:5419 OMIM:181500
J:194146




Genotype
MGI:5469877
cn5
Allelic
Composition
Gt(ROSA)26Sortm9(CAG-tdTomato)Hze/Gt(ROSA)26Sor+
Syngap1tm1.1Geno/Syngap1+
Genetic
Background
involves: 129S2/SvPas * 129S6/SvEvTac * C57BL/6 * C57BL/6NCr
Find Mice Using the International Mouse Strain Resource (IMSR)
Mouse lines carrying:
Gt(ROSA)26Sortm9(CAG-tdTomato)Hze mutation (7 available); any Gt(ROSA)26Sor mutation (1062 available)
Syngap1tm1.1Geno mutation (1 available); any Syngap1 mutation (50 available)
phenotype observed in females
phenotype observed in males
N normal phenotype
nervous system
• adult injection of cre-expressing virus produces an increase in intrinsic excitability of dentate gyrus neurons compared with control mice
• mice injected with a cre-expressing virus exhibit an increase in dentate gyrus neuron AMPA/NMDA ratio compared with control mice




Genotype
MGI:5469879
cn6
Allelic
Composition
Syngap1tm2Geno/Syngap1+
Tg(CAG-cre/Esr1*)5Amc/0
Genetic
Background
involves: 129S2/SvPas * C57BL/6 * CBA
Find Mice Using the International Mouse Strain Resource (IMSR)
Mouse lines carrying:
Syngap1tm2Geno mutation (1 available); any Syngap1 mutation (50 available)
Tg(CAG-cre/Esr1*)5Amc mutation (11 available)
phenotype observed in females
phenotype observed in males
N normal phenotype
behavior/neurological
• mice exhibit behavioral abnormalities as in Syngap1tm1Rlh heterozygotes
• untreated mice and mice treated with tamoxifen in adulthood exhibit absence of spontaneous alteration in a T-maze compared with control mice
• untreated mice and mice treated with tamoxifen in adulthood spend increased time in open arms of an elevated plus maze compared with control mice
• untreated mice and mice treated with tamoxifen in adulthood exhibit increased activity in an open field compared with control mice




Genotype
MGI:3581308
cx7
Allelic
Composition
Dlg4tm1Grnt/Dlg4tm1Grnt
Syngap1tm1Grnt/Syngap1+
Genetic
Background
involves: 129P2/OlaHsd * MF1
Find Mice Using the International Mouse Strain Resource (IMSR)
Mouse lines carrying:
Dlg4tm1Grnt mutation (0 available); any Dlg4 mutation (52 available)
Syngap1tm1Grnt mutation (0 available); any Syngap1 mutation (50 available)
phenotype observed in females
phenotype observed in males
N normal phenotype
nervous system
• 150 plulse trains of 5 Hz stimulations induced a more than twofold increase in long term potentiation (LTP) than in wildtype, which was similar to the LTP seen in single homozygous Dlgh4 mice




Genotype
MGI:3581305
cx8
Allelic
Composition
Hrastm1Grnt/Hrastm1Grnt
Syngap1tm1Grnt/Syngap1+
Genetic
Background
involves: 129P2/OlaHsd * MF1
Find Mice Using the International Mouse Strain Resource (IMSR)
Mouse lines carrying:
Hrastm1Grnt mutation (0 available); any Hras mutation (29 available)
Syngap1tm1Grnt mutation (0 available); any Syngap1 mutation (50 available)
phenotype observed in females
phenotype observed in males
N normal phenotype
nervous system
• long term potentiation induced by 150 pulses of 5 Hz stimulation in the hippocampal CA1 region was reduced compared to wildtype and single homozygous Hras1 mutants




Genotype
MGI:5469878
cx9
Allelic
Composition
Syngap1tm2Geno/Syngap1+
Tg(CAG-cre/Esr1*)5Amc/0
Genetic
Background
involves: 129S2/SvPas * C57BL/6 * CBA
Find Mice Using the International Mouse Strain Resource (IMSR)
Mouse lines carrying:
Syngap1tm2Geno mutation (1 available); any Syngap1 mutation (50 available)
Tg(CAG-cre/Esr1*)5Amc mutation (11 available)
phenotype observed in females
phenotype observed in males
N normal phenotype
behavior/neurological
• mice exhibit behavioral abnormalities as in Syngap1tm1Rlh heterozygotes
• untreated mice and mice treated with tamoxifen in adulthood exhibit absence of spontaneous alteration in a T-maze compared with control mice
• untreated mice and mice treated with tamoxifen in adulthood spend increased time in open arms of an elevated plus maze compared with control mice
• untreated mice and mice treated with tamoxifen in adulthood exhibit increased activity in an open field compared with control mice





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last database update
01/06/2026
MGI 6.24
The Jackson Laboratory