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Phenotypes associated with this allele
Allele Symbol
Allele Name
Allele ID
Foxa2tm1Jrt
targeted mutation 1, Janet Rossant
MGI:1857725
Summary 11 genotypes
Jump to Allelic Composition Genetic Background Genotype ID
hm1
Foxa2tm1Jrt/Foxa2tm1Jrt involves: 129S1/Sv * 129X1/SvJ MGI:3663268
hm2
Foxa2tm1Jrt/Foxa2tm1Jrt involves: 129S1/Sv * 129X1/SvJ * C57BL/6 MGI:3700819
hm3
Foxa2tm1Jrt/Foxa2tm1Jrt involves: 129S1/Sv * 129X1/SvJ * CD-1 MGI:2177170
ht4
Foxa2tm1Jrt/Foxa2+ involves: 129S1/Sv * 129X1/SvJ MGI:3625857
ht5
Foxa2tm1Jrt/Foxa2+ involves: 129S1/Sv * 129X1/SvJ * C57BL/6 MGI:2177168
ht6
Foxa2tm1Jrt/Foxa2+ involves: 129S1/Sv * 129X1/SvJ * CD-1 MGI:2177169
cn7
Foxa2tm1Jrt/Foxa2tm1Khk
Tg(Nes-cre)1Wme/0
involves: 129P2/OlaHsd * C57BL/6 * CBA MGI:3029694
cx8
Foxa2tm1Jrt/Foxa2+
Gsctm1Bhr/Gsctm1Bhr
involves: 129 * C57BL/6 * CD-1 MGI:2169198
cx9
Foxa2tm1Jrt/Foxa2+
Nodaltm1Rob/Nodal+
involves: 129S/SvEv * 129S1/Sv * 129X1/SvJ MGI:3625856
cx10
Foxa2tm1Jrt/Foxa2tm1Jrt
Gsctm1Bhr/Gsctm1Bhr
involves: 129/Sv * C57BL/6 * CD-1 MGI:3716760
cx11
Foxa2tm1Jrt/Foxa2tm1Jrt
Gsctm1Bhr/Gsc+
involves: 129/Sv * C57BL/6 * CD-1 MGI:3716761


Genotype
MGI:3663268
hm1
Allelic
Composition
Foxa2tm1Jrt/Foxa2tm1Jrt
Genetic
Background
involves: 129S1/Sv * 129X1/SvJ
Find Mice Using the International Mouse Strain Resource (IMSR)
Mouse lines carrying:
Foxa2tm1Jrt mutation (2 available); any Foxa2 mutation (26 available)
phenotype observed in females
phenotype observed in males
N normal phenotype
embryo
• A-P axis appears to be aligned incorrectly and the anterior pole of the axis remains in the distal region of the embryo
• absence of a distinct node
• the streak is incorrectly positioned in the proximal region of the epiblast
• primitive streak does not extend the full length of the posterior side of the embryo




Genotype
MGI:3700819
hm2
Allelic
Composition
Foxa2tm1Jrt/Foxa2tm1Jrt
Genetic
Background
involves: 129S1/Sv * 129X1/SvJ * C57BL/6
Find Mice Using the International Mouse Strain Resource (IMSR)
Mouse lines carrying:
Foxa2tm1Jrt mutation (2 available); any Foxa2 mutation (26 available)
phenotype observed in females
phenotype observed in males
N normal phenotype
cellular
• embryos exhibit an increase in overall level of cell death; cell death is higher in the region distal to the primitive streak than in the proximal region of the E6.5 embryo

embryo
• embryos exhibit an increase in overall level of cell death; cell death is higher in the region distal to the primitive streak than in the proximal region of the E6.5 embryo




Genotype
MGI:2177170
hm3
Allelic
Composition
Foxa2tm1Jrt/Foxa2tm1Jrt
Genetic
Background
involves: 129S1/Sv * 129X1/SvJ * CD-1
Find Mice Using the International Mouse Strain Resource (IMSR)
Mouse lines carrying:
Foxa2tm1Jrt mutation (2 available); any Foxa2 mutation (26 available)
phenotype observed in females
phenotype observed in males
N normal phenotype
mortality/aging

embryo
• embryos exhibit an increase in overall level of cell death; cell death is higher in the region distal to the primitive streak than in the proximal region of the E6.5 embryo
• at E9.5 in less severely affected embryos the anterior structures are either misshapen or truncated
• at E9.5 in less severely affected embryos the anterior structures may be truncated
• by E7.5 the embryonic tissues are reduced in size and abnormally shaped
• at E8.5 in severely affected embryos only a small structure links the posterior end of the embryo to the exocoelom and few embryonic tissues are recognizable
• at E6.5 primitive endoderm cells accumulate at the distal tip of the embryo and these cells appear rough and dull
• in less severely affected embryos the anterior neural tube is abnormal
• dorso-ventral patterning of the neural tube is abnormal
• in less severely affected embryos the posterior neural tube is kinked
• at E7.5 no definitive node structure is detected
• cells expressing Gsc fail to migrate to the node
• at E7.5 only the region of the primitive streak closest to the embryonic extraembryonic tissue boundary is present
• in less severely affected embryos the somites are irregularly shaped
• in less severely affected embryos the somites are small
• in less severely affected embryos the somites are often fused at the midline
• at E6.5 an abnormal constriction between the embryonic and extraembryonic tissue is seen

nervous system
• in less severely affected embryos the anterior neural tube is abnormal
• dorso-ventral patterning of the neural tube is abnormal
• in less severely affected embryos the posterior neural tube is kinked

digestive/alimentary system
• at E8.5 no signs of gut development are seen however by E9.5 a closed gut like structure is seen ventral to the spinal cord in the trunk region of some embryos
• at E9.5 in the anterior portion of the embryo cell expressing gut markers are found on the outside rather than the inside of the embryo suggesting failure of invagination

cellular
• embryos exhibit an increase in overall level of cell death; cell death is higher in the region distal to the primitive streak than in the proximal region of the E6.5 embryo




Genotype
MGI:3625857
ht4
Allelic
Composition
Foxa2tm1Jrt/Foxa2+
Genetic
Background
involves: 129S1/Sv * 129X1/SvJ
Find Mice Using the International Mouse Strain Resource (IMSR)
Mouse lines carrying:
Foxa2tm1Jrt mutation (2 available); any Foxa2 mutation (26 available)
phenotype observed in females
phenotype observed in males
N normal phenotype
mortality/aging
• some of those that survive until weaning die by 3 months of age
• Background Sensitivity: loss prior to weaning is higher on a mixed 129 and C57BL/6 background than on a 129 background

craniofacial
• overgrowth of the upper and lower incisors is seen in mice with malocclusion
• malocclusion of the jaws is seen in those that die by 3 months of age

behavior/neurological
• seen in those that die by 3 months of age
• seen in those that die by 3 months of age

growth/size/body
• overgrowth of the upper and lower incisors is seen in mice with malocclusion
• malocclusion of the jaws is seen in those that die by 3 months of age
• seen in those that die by 3 months of age

skeleton
• overgrowth of the upper and lower incisors is seen in mice with malocclusion
• malocclusion of the jaws is seen in those that die by 3 months of age




Genotype
MGI:2177168
ht5
Allelic
Composition
Foxa2tm1Jrt/Foxa2+
Genetic
Background
involves: 129S1/Sv * 129X1/SvJ * C57BL/6
Find Mice Using the International Mouse Strain Resource (IMSR)
Mouse lines carrying:
Foxa2tm1Jrt mutation (2 available); any Foxa2 mutation (26 available)
phenotype observed in females
phenotype observed in males
N normal phenotype
mortality/aging
• some of those that survive until weaning die by 3 months of age
• Background Sensitivity: loss prior to weaning is higher on a mixed 129 and C57BL/6 background than on a 129 background

craniofacial
• overgrowth of the upper and lower incisors is seen in mice with malocclusion
• malocclusion of the jaws is seen in those that die by 3 months of age

behavior/neurological
• seen in those that die by 3 months of age
• seen in those that die by 3 months of age

growth/size/body
• overgrowth of the upper and lower incisors is seen in mice with malocclusion
• malocclusion of the jaws is seen in those that die by 3 months of age
• seen in those that die by 3 months of age

skeleton
• overgrowth of the upper and lower incisors is seen in mice with malocclusion
• malocclusion of the jaws is seen in those that die by 3 months of age




Genotype
MGI:2177169
ht6
Allelic
Composition
Foxa2tm1Jrt/Foxa2+
Genetic
Background
involves: 129S1/Sv * 129X1/SvJ * CD-1
Find Mice Using the International Mouse Strain Resource (IMSR)
Mouse lines carrying:
Foxa2tm1Jrt mutation (2 available); any Foxa2 mutation (26 available)
phenotype observed in females
phenotype observed in males
N normal phenotype
mortality/aging
• about 20% of those that survive until weaning die by 3 months of age and display abnormalities
• Background Sensitivity: loss prior to weaning is higher on a mixed 129 and C57BL/6 background than on a 129 background or mixed 129 and CD-1 background

craniofacial
• overgrowth of the upper and lower incisors is seen in mice with malocclusion
• malocclusion of the jaws is seen in those that die by 3 months of age

behavior/neurological
• seen in those that die by 3 months of age
• seen in those that die by 3 months of age

growth/size/body
• overgrowth of the upper and lower incisors is seen in mice with malocclusion
• malocclusion of the jaws is seen in those that die by 3 months of age
• seen in those that die by 3 months of age

skeleton
• overgrowth of the upper and lower incisors is seen in mice with malocclusion
• malocclusion of the jaws is seen in those that die by 3 months of age




Genotype
MGI:3029694
cn7
Allelic
Composition
Foxa2tm1Jrt/Foxa2tm1Khk
Tg(Nes-cre)1Wme/0
Genetic
Background
involves: 129P2/OlaHsd * C57BL/6 * CBA
Find Mice Using the International Mouse Strain Resource (IMSR)
Mouse lines carrying:
Foxa2tm1Jrt mutation (2 available); any Foxa2 mutation (26 available)
Foxa2tm1Khk mutation (1 available); any Foxa2 mutation (26 available)
Tg(Nes-cre)1Wme mutation (1 available)
phenotype observed in females
phenotype observed in males
N normal phenotype
mortality/aging

embryo
• the axial mesendoderm failed to differentiate; the anterior neural plate and anterior definitive endoderm form, but fail to maintain specification

nervous system
• anterior head truncations were noted in mutant animals




Genotype
MGI:2169198
cx8
Allelic
Composition
Foxa2tm1Jrt/Foxa2+
Gsctm1Bhr/Gsctm1Bhr
Genetic
Background
involves: 129 * C57BL/6 * CD-1
Find Mice Using the International Mouse Strain Resource (IMSR)
Mouse lines carrying:
Foxa2tm1Jrt mutation (2 available); any Foxa2 mutation (26 available)
Gsctm1Bhr mutation (0 available); any Gsc mutation (15 available)
phenotype observed in females
phenotype observed in males
N normal phenotype
mortality/aging

embryo
• pyknotic cells are seen in the mesenchyme of the first branchial arches
• the first branchial arch arteries are either not visible or poorly formed
• epithelium of the first arch fails to fuse ventrally with the pharyngeal endoderm
• the first branchial arch arteries are either not visible or poorly formed
• at E9.5
• expression analysis indicates reduced populations of both mesodermal and neural crest cells
• pyknotic cells are seen in the mesenchyme of the second branchial arches
• at E9.5
• expression analysis indicates reduced populations of both mesodermal and neural crest cells
• at E8.75 defects are seen in the anterior end of the embryo including the region of the heart; however, development posterior to the heart is normal
• variable severity of the defects at E9.0 - E9.5
• at E9.0 - E9.5 dorsal-ventral patterning of the forebrain is abnormal
• at E9.0 - E9.5 in severely affected embryos expression analysis indicates ventral expansion of dorsal cell fates in floor plate cells with resulting loss of ventral structures
• however, anterior-posterior patterning of the neural tube is unaffected
• arrest around the 20 - 25 somite stage
• at E9.0 - E9.5
• at E9.5 in severely affected embryos the floor and roof of the neural tube are in contact with each other at the diencephalic-mesencephalic junction
• at E9.0 - E9.5 in severely affected embryos expression analysis indicates ventral expansion of dorsal cell fates in floor plate cells with resulting loss of ventral structures
• however, anterior-posterior patterning of the neural tube is unaffected
• at E9.5 in less severely affected embryos thinning of the neuroepithelium is seen in the forebrain, hindbrain, and spinal cord
• reduction in neuroepithelium is most severe in the forebrain
• in severely affected embryos notochord cells disappear from the rostral half of the embryo by E9.5
• however, in less severely affected embryos notochord cells are maintained
• reduced in size at E9.0 - E9.5

cardiovascular system
• at E9.5 the dorsal aorta is elongated, enlarged, or disorganized
• the first branchial arch arteries are either not visible or poorly formed
• greatly enlarged anterior cardinal veins at E9.5
• by E9.5, the dorsal mesocardium fails to form resulting in connection of the heart to the gut
• defects in heart looping are seen at E8.75
• at E9.5 the heart is a straight or S-shaped tube at the midline
• the dorsal mesocardium fails to form

vision/eye
• smaller at E9.5 in less severely affected embryos
• at E9.5 in more severely affected embryos the optic vesicle is lost as a result of lack of maintenance as optic vesicles are present at E8.75

nervous system
• at E9.5 in severely affected embryos the floor and roof of the neural tube are in contact with each other at the diencephalic-mesencephalic junction
• at E9.0 - E9.5 in severely affected embryos expression analysis indicates ventral expansion of dorsal cell fates in floor plate cells with resulting loss of ventral structures
• however, anterior-posterior patterning of the neural tube is unaffected
• at E9.5 in less severely affected embryos thinning of the neuroepithelium is seen in the forebrain, hindbrain, and spinal cord
• reduction in neuroepithelium is most severe in the forebrain
• dorsal-ventral patterning is abnormal
• dramatically reduced at E8.75
• reduced in size at E9.0 - E9.5
• at E9.0 - E9.5

respiratory system
• smaller and abnormally shaped

growth/size/body
• at E9.0 - E9.5

craniofacial
• pyknotic cells are seen in the mesenchyme of the first branchial arches
• the first branchial arch arteries are either not visible or poorly formed
• epithelium of the first arch fails to fuse ventrally with the pharyngeal endoderm
• the first branchial arch arteries are either not visible or poorly formed
• at E9.5
• expression analysis indicates reduced populations of both mesodermal and neural crest cells
• pyknotic cells are seen in the mesenchyme of the second branchial arches
• at E9.5
• expression analysis indicates reduced populations of both mesodermal and neural crest cells




Genotype
MGI:3625856
cx9
Allelic
Composition
Foxa2tm1Jrt/Foxa2+
Nodaltm1Rob/Nodal+
Genetic
Background
involves: 129S/SvEv * 129S1/Sv * 129X1/SvJ
Find Mice Using the International Mouse Strain Resource (IMSR)
Mouse lines carrying:
Foxa2tm1Jrt mutation (2 available); any Foxa2 mutation (26 available)
Nodaltm1Rob mutation (1 available); any Nodal mutation (41 available)
phenotype observed in females
phenotype observed in males
N normal phenotype
embryo
• in embryos with loss of left-right asymmetry in Nodal expression the direction of turning is randomized
• seen in all embryos

growth/size/body
• in 7 of 10 mutants the positioning of the abdominal viscera and heart is abnormal




Genotype
MGI:3716760
cx10
Allelic
Composition
Foxa2tm1Jrt/Foxa2tm1Jrt
Gsctm1Bhr/Gsctm1Bhr
Genetic
Background
involves: 129/Sv * C57BL/6 * CD-1
Find Mice Using the International Mouse Strain Resource (IMSR)
Mouse lines carrying:
Foxa2tm1Jrt mutation (2 available); any Foxa2 mutation (26 available)
Gsctm1Bhr mutation (0 available); any Gsc mutation (15 available)
phenotype observed in females
phenotype observed in males
N normal phenotype
embryo
• phenotype at E9.5 is similar to that of Foxa2 single homozygotes with no increase in the severity of the defect in development of the anterior posterior axis
• embryos are small and thin

growth/size/body
• embryos are small and thin




Genotype
MGI:3716761
cx11
Allelic
Composition
Foxa2tm1Jrt/Foxa2tm1Jrt
Gsctm1Bhr/Gsc+
Genetic
Background
involves: 129/Sv * C57BL/6 * CD-1
Find Mice Using the International Mouse Strain Resource (IMSR)
Mouse lines carrying:
Foxa2tm1Jrt mutation (2 available); any Foxa2 mutation (26 available)
Gsctm1Bhr mutation (0 available); any Gsc mutation (15 available)
phenotype observed in females
phenotype observed in males
N normal phenotype
embryo
• phenotype at E9.5 is similar to that of Foxa2 single homozygotes with no increase in the severity of the defect in development of the anterior posterior axis
• embryos are small and thin

growth/size/body
• embryos are small and thin





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last database update
04/23/2024
MGI 6.23
The Jackson Laboratory