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Gene Expression Data
Assay Details
Assay
Reference: J:138816 Plusa B, et al., Distinct sequential cell behaviours direct primitive endoderm formation in the mouse blastocyst. Development. 2008 Sep;135(18):3081-91
Assay type: Immunohistochemistry
MGI Accession ID: MGI:5776181
Gene symbol: Gata4
Gene name: GATA binding protein 4
Antibody: anti-Gata4
Detection system: Secondary antibody coupled to Alexa Fluor
Assay notes: Heterozygous and homozygous embryos were indistinguishable.
Results
Specimen 1A: embryonic day 4.0 (more )
Note: Double labeled: red - Gata4; green - Pdgfra (assay MGI:5776173).
Structure Level Pattern Image Note
TS5: inner cell mass Present Regionally restricted 1A GATA4 , 1A merge Expression is localized to the primitive endoderm layer of the blastocyst; it co-localized with another expression marker for this layer.

Specimen 1D: embryonic day 4.5; Pdgfratm11(EGFP)Sor/? (more )
Note: Double labeled: red - Gata4; green - Pdgfra reporter (assay MGI:5776158).
Structure Level Pattern Image Note
TS6: primitive endoderm Present 1D GATA4 , 1D merge Expression is localized to the primitive endoderm layer of the blastocyst; it co-localized with a reporter for another gene that is a marker for this layer.

Specimen 4A: embryonic day 3.5; Pdgfratm11(EGFP)Sor/? (more )
Note: 32-cell blastocyst; triple labeled: red - Gata4; white - Nanog (assay MGI:5776486); green - Pdgfra reporter (assay MGI:5776158).
Structure Level Pattern Image Note
TS4: blastocyst Absent 4A merge , 4A Gata4

Specimen 4B: embryonic day 4.0; Pdgfratm11(EGFP)Sor/? (more )
Note: 64-cell blastocyst; triple labeled: red - Gata4; white - Nanog (assay MGI:5776486); green - Pdgfra reporter (assay MGI:5776158).
Structure Level Pattern Image Note
TS5: inner cell mass Present Single cells 4B merge , 4B Gata4 Of the embryos examined, 60% (n=15) showed expression at this stage. The number of expressing cells observed ranges from 2 to 13. They are distributed heterogeneously.
TS5: trophectoderm Absent 4B merge , 4B Gata4

Specimen not shown - 58-63 cells: embryonic day 4.0; Pdgfratm11(EGFP)Sor/? (more )
Structure Level Pattern Image Note
TS5: blastocyst Absent 40% of embryos examined at this stage did not show expression.

Specimen 4C: embryonic day 4.5; Pdgfratm11(EGFP)Sor/? (more )
Note: 115-cell blastocyst; triple labeled: red - Gata4; white - Nanog (assay MGI:5776486); green - Pdgfra reporter (assay MGI:5776158).
Structure Level Pattern Image Note
TS6: primitive endoderm Present 4C merge , 4C Gata4
TS6: trophectoderm Absent 4C Gata4 , 4C merge

Specimen 4D: embryonic day 4.5; Pdgfratm11(EGFP)Sor/? (more )
Note: 118-cell blastocyst; triple labeled: red - Gata4; white - Nanog (assay MGI:5776486); green - Pdgfra reporter (assay MGI:5776158).
Structure Level Pattern Image Note
TS6: primitive endoderm Present 4D Gata4 , 4D merge Of the 96 embryos of >100 cells examined, 80.2% of them had expression restricted to the primitive endoderm layer.
TS6: epiblast Absent 4D merge , 4D Gata4
TS6: trophectoderm Absent 4D merge , 4D Gata4

Specimen 5A: embryonic day 4.0 (more )
Note: 65-cell blastocyst; double labeled: red - Gata4; white - Nanog (assay MGI:5776486).
Structure Level Pattern Image Note
TS5: inner cell mass Present Single cells 5A There is a salt and pepper distribution of expression.
TS5: trophectoderm Absent 5A

Specimen 5B: embryonic day 4.0 (more )
Note: 72-cell blastocyst; double labeled: red - Gata4; white - Nanog (assay MGI:5776486).
Structure Level Pattern Image Note
TS5: inner cell mass Present Single cells 5B There is a salt and pepper distribution of expression.
TS5: trophectoderm Absent 5B

Specimen 5C: embryonic day 4.5 (more )
Note: 108-cell blastocyst; double labeled: red - Gata4; white - Nanog (assay MGI:5776486).
Structure Level Pattern Image Note
TS6: primitive endoderm Present 5C At this stage approximately half the embryos exhibit partial or complete segregation of expression to this layer; the other embryos exhibit the salt and pepper distribution pattern of expression seen at earlier stages. One or two expressing cells may persist in the deeper layers of the inner cell mass.
TS6: trophectoderm Absent 5C

Specimen 5D: embryonic day 4.5 (more )
Note: 115-cell blastocyst; double labeled: red - Gata4; white - Nanog (assay MGI:5776486).
Structure Level Pattern Image Note
TS6: primitive endoderm Present 5D
TS6: trophectoderm Absent 5D


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Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/25/2025
MGI 6.24
The Jackson Laboratory