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Gene Expression Data
Assay Details
Assay
Reference: J:117268 Nagae S, et al., Temporal and spatial expression profiles of the Fat3 protein, a giant cadherin molecule, during mouse development. Dev Dyn. 2007 Feb;236(2):534-43
Assay type: Immunohistochemistry
MGI Accession ID: MGI:5551593
Gene symbol: Fat3
Gene name: FAT atypical cadherin 3
Antibody: Anti-Fat3
Detection system: Secondary antibody coupled to Alexa Fluor
Results
Specimen 3A: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS22: cerebral cortex Present Regionally restricted 3A Expression was detected in apical and basal dendrites.

Specimen 3B: postnatal day 1 (more )
Structure Level Pattern Image Note
TS27: cerebral cortex Present Regionally restricted 3B Expression was detected in apical and basal dendrites.

Specimen 3C,C'': postnatal day 1 (more )
Note: Double labeled: red - Fat3; green - Map2 (assay MGI:5551594).
Structure Level Pattern Image Note
TS27: cerebral cortex Present Regionally restricted 3C , 3C'' Expression overlapped with Map2.

Specimen 3D: embryonic day 14.5 (more )
Note: Double labeled: red - Fat3; green - Cntn2 (TAG-1; assay MGI:5551598).
Structure Level Pattern Image Note
TS22: telencephalon Present Regionally restricted 3D Expression was detected in corticofugal axons, overlapping with Tag-1 (Cntn2) signal.

Specimen 3E: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS22: telencephalon Present Regionally restricted 3E Expression was detected in the internal capsule.
TS22: thalamus Present 3E

Specimen 3F: postnatal day 1 (more )
Structure Level Pattern Image Note
TS27: parietal cortex Present Regionally restricted 3F Expression was detected in the parietal cortex area 1.
TS27: corpus callosum Present 3F
TS27: optic tract Present 3F
TS27: thalamus Present 3F
TS27: midbrain Present Regionally restricted 3F Expression was detected in the cerebral peduncle.
TS27: diencephalon Present Regionally restricted 3F Expression was detected in the mammillothalamic tract.

Specimen 3G: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS22: hippocampus Present Regionally restricted 3G Expression was detected in the primitive plexiform layer.

Specimen 3H: postnatal day 1 (more )
Structure Level Pattern Image Note
TS27: hippocampus stratum lacunosum Present 3H

Specimen 3I: embryonic day 14.5 (more )
Note: Double labeled: red - Fat3; green - Cntn2 (TAG-1; assay MGI:5551598).
Structure Level Pattern Image Note
TS22: midbrain Present Regionally restricted 3I Expression was detected in the fasciculus retroflexus.

Specimen 3J: postnatal day 1 (more )
Structure Level Pattern Image Note
TS27: midbrain Present Regionally restricted 3J Expression was detected in the fasciculus retroflexus, mammillotegmental tract, and mammillothalamic tract.

Specimen 3K: embryonic day 14.5 (more )
Note: Double labeled: red - Fat3; green - L1cam (assay MGI:5551601).
Structure Level Pattern Image Note
TS22: midbrain Present Regionally restricted 3K Expression was detected in the midbrain and the mammillotegmental tract.
TS22: spinal cord Present Regionally restricted 3K Expression was detected in axon fibers.

Specimen 3L: postnatal day 1 (more )
Structure Level Pattern Image Note
TS27: midbrain Present 3L

Specimen 3M: embryonic day 14.5 (more )
Note: Double labeled: red - Fat3; green - L1cam (assay MGI:5551601).
Structure Level Pattern Image Note
TS22: superior colliculus Present 3M Signal partially overlapped with L1-cam signal.

Specimen data not shown E17.5: embryonic day 17.5 (more )
Structure Level Pattern Image Note
TS25: cerebellum Absent

Specimen data not shown P1: postnatal day 1 (more )
Structure Level Pattern Image Note
TS27: cerebellum Absent

Specimen 3N: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS22: spinal cord Present Regionally restricted 3N Expression was detected in axon tracts or fascicles.

Specimen 3O: postnatal day 1 (more )
Structure Level Pattern Image Note
TS27: spinal cord Absent 3O

Specimen 4G: embryonic day 11.5 (more )
Structure Level Pattern Image Note
TS19: telencephalon Present Regionally restricted 4G Expression was detected in the most rostral region of the cortex in the presumptive mitral cells.

Specimen 4H: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS22: main olfactory bulb Present Regionally restricted 4H Expression was widely detected in the intermediate zone and in the mitral cell layer.

Specimen 4I: embryonic day 17.5 (more )
Structure Level Pattern Image Note
TS25: main olfactory bulb Present Regionally restricted 4I Expression became concentrated in the external plexiform layer.

Specimen 4J,K: postnatal day 3 (more )
Structure Level Pattern Image Note
TS27: main olfactory bulb external plexiform layer Present 4K , 4J Dot-like signals were noted on the dendrites of mitral cells.
TS27: main olfactory bulb glomerular layer Present 4J

Specimen 4L: embryonic day 14.5 (more )
Note: Double labeled: green - Fat3; red - L1cam (assay MGI:5551601).
Structure Level Pattern Image Note
TS22: telencephalon Present Regionally restricted 4L Expression was detected in the lateral olfactory tract.

Specimen not shown: postnatal adult (more )
Structure Level Pattern Image Note
TS28: main olfactory bulb Trace

Specimen 5A,A'': embryonic day 17.5 (more )
Note: Double labeled: red - Fat3; green - Gap43 (assay MGI:5551626).
Structure Level Pattern Image Note
TS25: main olfactory bulb Present Regionally restricted 5A'' , 5A Expression was detected in the dendrites and axons of mitral cells. There was no co-expression with Gap43 in the olfactory sensory neuron axons in the outer nuclear layer, but partial overlap was noted at the outer nuclear layer border.

Specimen 5B,B'': postnatal day 1 (more )
Note: Double labeled: red - Fat3; green - Gap43 (assay MGI:5551626).
Structure Level Pattern Image Note
TS27: main olfactory bulb glomerular layer Present 5B'' , 5B Expression was detected over the glomeruli and overlapped with Gap43.

Specimen 5C,C'': postnatal day 1 (more )
Note: Double labeled: red - Fat3; green - Map2 (assay MGI:5551594).
Structure Level Pattern Image Note
TS27: main olfactory bulb external plexiform layer Present Regionally restricted 5C'' , 5C Expression overlapped with Map2 on mitral cell dendrites.
TS27: main olfactory bulb glomerular layer Present Regionally restricted 5C'' , 5C Expression overlapped with Map2 on mitral cell dendrites.

Specimen 5D,D'': postnatal day 1 (more )
Note: Double labeled: red - Fat3; green - Mapt (Tau; assay MGI:5551622).
Structure Level Pattern Image Note
TS27: main olfactory bulb internal plexiform layer Present Regionally restricted 5D , 5D'' Expression overlapped with Tau on mitral cell axons.

Specimen 6E: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS22: retina Present Regionally restricted 6E Expression was detected in the nerve fiber layer.

Specimen 6F: embryonic day 17.5 (more )
Structure Level Pattern Image Note
TS25: neural retina Present Regionally restricted 6F Expression was detected in the inner plexiform layer.

Specimen 6G,H: postnatal day 11 (more )
Structure Level Pattern Image Note
TS28: retina inner plexiform layer Present Non-Uniform 6G , 6H Expression in the inner plexiform layer reached a maximum at P11. Sublaminar structures were differentially labeled.

Specimen 6I: postnatal day 11 (more )
Structure Level Pattern Image Note
TS28: retina inner plexiform layer Present 6I Expression in the inner plexiform layer overlapped with Syntaxin.

Specimen not shown: postnatal adult (more )
Structure Level Pattern Image Note
TS28: retina Absent

Specimen 6J: postnatal day 1 (more )
Structure Level Pattern Image Note
TS27: optic tract Present 6J


Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
05/07/2024
MGI 6.23
The Jackson Laboratory