Mapping Data

Experiment

• Experiment
  CROSS
• Chromosome
  14
• Reference
  J:10510 Ceci JD, et al., An interspecific backcross linkage map of the proximal half of mouse chromosome 14. Genomics. 1990 Apr;6(4):673-8
• ID
  MGI:38999

Genes

Gene	Assay Type	Description
Rarb	Southern analysis	pCOD20
Plau	Southern analysis	pDB1519
Psp-rs1	Southern analysis	HhaI-Psp
Rnase1	Southern analysis	pMPR-1
Tcra	Southern analysis	plc(alpha)
Gzmb	Southern analysis	C.1.1
Bmp1	Southern analysis	Bmp1-215
Hr	Southern analysis	BgX

Notes

• Reference
  Revised gene symbols: Rarb, Bmp1 (formerly Hap, Bmp-1 respectively).
• Experiment
  A total of 198 mice were analyzed, of these 87 mice were not typed for Bmp1, 111 mice were typed for all loci including Bmp1.Offspring types indicate alleles inherited from F1 parent.
  

CROSS

• Type
  Backcross, female
• Female Parent
  <b> <b> <b> <b> <b> <b> <b> <b>/<s> <s> <s> <s> <s> <s> <s> <s>
• Strain
  (C57BL/6J x M. spretus)F1
• Male Parent
  <b> <b> <b> <b> <b> <b> <b> <b>/<b> <b> <b> <b> <b> <b> <b> <b>
• Strain
  C57BL/6J
• Mapping Panel
  Copeland-Jenkins
• Allele 1
  b from C57BL/6J
• Allele 2
  s from M. spretus

CROSS Data

MC #mice	Rarb	Plau	Psp-rs1	Rnase1	Tcra	Gzmb	Bmp1	Hr
27	b	b	b	b	b	b	b	b
43	s	s	s	s	s	s	s	s
1	b	s	s	s	s	s	s	s
0	s	b	b	b	b	b	b	b
10	b	b	s	s	s	s	s	s
10	s	s	b	b	b	b	b	b
1	b	b	b	b	s	s	s	s
0	s	s	s	s	b	b	b	b
1	b	b	b	b	b	s	s	s
0	s	s	s	s	s	b	b	b
8	b	b	b	b	b	b	s	s
9	s	s	s	s	s	s	b	b
0	b	b	b	b	b	b	b	s
1	s	s	s	s	s	s	s	b
39	b	b	b	b	b	b	.	b
30	s	s	s	s	s	s	.	s
2	b	s	s	s	s	s	.	s
6	b	b	s	s	s	s	.	s
9	s	s	b	b	b	b	.	b
1	b	b	b	b	s	s	.	s

Statistics

Marker 1	Marker 2	# Recombinants	Total	% Recombinants	Std Error
Rarb	Plau	3	198	1.515	0.868
Plau	Psp-rs1	35	198	17.677	2.711
Psp-rs1	Rnase1	0	198	0.000	0.000
Rnase1	Tcra	2	198	1.010	0.711
Tcra	Gzmb	1	198	0.505	0.504
Gzmb	Bmp1	17	111	15.315	3.418
Bmp1	Hr	1	111	0.901	0.897