EPCAM Vertebrate HGNC

Vertebrate Homology

Source

Alliance of Genome Resources

Comparative GO Graph (mouse, human, rat, zebrafish)

Alliance Homology Information

Species	Symbol	Gene Links	Genetic Location	Genome Coordinates (mouse and human only)	Associated Human Diseases	Sequences select all deselect all Go
human	EPCAM	HGNC:11529 (HGNC) 4072 (Entrez Gene) 185535 (OMIM) EPCAM (Alliance of Genome Resources)	Chr2 p21	Chr2:47345158-47387601 (+) GRCh38	congenital diarrhea 5 with tufting enteropathy hereditary nonpolyposis colorectal cancer type 8	P16422 (UniProt \| EBI) NM_002354 (RefSeq)
mouse	Epcam	MGI:106653 (MGI) 17075 (Entrez Gene) Gene Tree Epcam (Alliance of Genome Resources)	Chr17 57.87 cM	Chr17:87943407-87958555 (+) GRCm39	congenital diarrhea 5 with tufting enteropathy	17075 (NCBI Gene Model) Q99JW5 (UniProt \| EBI) NM_008532 (RefSeq)
rat	Epcam	RGD:621365 (Rat Genome Database) 171577 (Entrez Gene) Epcam (Alliance of Genome Resources)	Chr6 q12			O55159 (UniProt \| EBI) NM_138541 (RefSeq)
zebrafish	epcam	ZDB-GENE-040426-2209 (Zebrafish Model Organism Database) 406454 (Entrez Gene) epcam (Alliance of Genome Resources)	Chr13			NP_001017593 (RefSeq) NM_001017593 (RefSeq)

Alliance Homology Information

MGI loads orthology data based on the 'stringent' set from the Alliance of Genome Resources. The Alliance sets are based on a scoring system developed by the Alliance in collaboration with DIOPT.

MGI includes orthology for the following vertebrate species from the Alliance:
- human
- mouse
- rat
- zebrafish

These are a subset of the total species represented in the Alliance; there may be stringent set orthologs in other Alliance species.

Contributing Projects: Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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