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Gene Expression Data
Assay Details
Assay
Reference: J:162220 Magdaleno S, et al., BGEM: an in situ hybridization database of gene expression in the embryonic and adult mouse nervous system. PLoS Biol. 2006 Apr;4(4):e86
Assay type: RNA in situ
MGI Accession ID: MGI:4944933
Gene symbol: Htr5a
Gene name: 5-hydroxytryptamine (serotonin) receptor 5A
Probe: g00371
Probe preparation: Antisense labelled with P33 RNA
Visualized with: Autoradiography
Results
Specimen g00371 E11.5: embryonic day 11.5 (more )
Structure Level Pattern Image Note
TS19: diencephalon Present Widespread g00371_sj_g40_054_e11 , g00371_sj_g40_004_e11
TS19: midbrain Present Widespread g00371_sj_g40_054_e11 , g00371_sj_g40_004_e11
TS19: hindbrain Present Widespread g00371_sj_g40_004_e11 , g00371_sj_g40_054_e11
TS19: future spinal cord Present Widespread g00371_sj_g40_004_e11 , g00371_sj_g40_054_e11
TS19: telencephalon Present Widespread g00371_sj_g40_054_e11 , g00371_sj_g40_004_e11

Specimen g00371 E15.5: embryonic day 15.5 (more )
Structure Level Pattern Image Note
TS23: cerebellum Present Regionally restricted g00371_sj_g39_103_e15 , g00371_sj_g39_003_e15 , g00371_sj_g39_053_e15 Expression was region specific and scattered.
TS23: ganglionic eminence Present Widespread g00371_sj_g39_003_e15 , g00371_sj_g39_053_e15 , g00371_sj_g39_103_e15
TS23: hindbrain Present Regionally restricted g00371_sj_g39_003_e15 , g00371_sj_g39_103_e15 , g00371_sj_g39_053_e15 Expression was region specific and scattered.
TS23: hippocampus Present Widespread g00371_sj_g39_103_e15 , g00371_sj_g39_003_e15 , g00371_sj_g39_053_e15
TS23: hypothalamus Present Regionally restricted g00371_sj_g39_003_e15 , g00371_sj_g39_103_e15 , g00371_sj_g39_053_e15 Expression was region specific and scattered.
TS23: midbrain Present Widespread g00371_sj_g39_003_e15 , g00371_sj_g39_053_e15 , g00371_sj_g39_103_e15
TS23: neocortex Present Widespread g00371_sj_g39_103_e15 , g00371_sj_g39_003_e15 , g00371_sj_g39_053_e15
TS23: main olfactory bulb Present Regionally restricted g00371_sj_g39_103_e15 , g00371_sj_g39_003_e15 , g00371_sj_g39_053_e15 Expression was region specific and scattered.
TS23: retina Present Regionally restricted g00371_sj_g39_103_e15 , g00371_sj_g39_003_e15 , g00371_sj_g39_053_e15
TS23: spinal cord Present Widespread g00371_sj_g39_053_e15 , g00371_sj_g39_103_e15 , g00371_sj_g39_003_e15

Specimen g00371 P7: postnatal day 7 (more )
Structure Level Pattern Image Note
TS28: basal ganglia Present Regionally restricted g00371_sj_g28_054_p7 , g00371_sj_g28_004_p7 , g00371_sj_g28_104_p7 Expression was region specific and scattered.
TS28: choroid plexus Present Regionally restricted g00371_sj_g28_104_p7 , g00371_sj_g28_054_p7 , g00371_sj_g28_004_p7
TS28: hypothalamus Present Regionally restricted g00371_sj_g28_004_p7 , g00371_sj_g28_054_p7 , g00371_sj_g28_104_p7 Expression was region specific and scattered.
TS28: midbrain Present Regionally restricted g00371_sj_g28_104_p7 , g00371_sj_g28_004_p7 , g00371_sj_g28_054_p7 Expression was region specific and scattered.
TS28: retina Present Regionally restricted g00371_sj_g28_054_p7 , g00371_sj_g28_104_p7 , g00371_sj_g28_004_p7
TS28: spinal cord Present Widespread g00371_sj_g28_104_p7 , g00371_sj_g28_004_p7 , g00371_sj_g28_054_p7
TS28: thalamus Present Regionally restricted g00371_sj_g28_104_p7 , g00371_sj_g28_054_p7 , g00371_sj_g28_004_p7 Expression was region specific and scattered.
TS28: amygdala Strong Regionally restricted g00371_sj_g28_004_p7 , g00371_sj_g28_104_p7 , g00371_sj_g28_054_p7 Expression was region specific and scattered.
TS28: brainstem Strong Regionally restricted g00371_sj_g28_054_p7 , g00371_sj_g28_104_p7 , g00371_sj_g28_004_p7 Expression was region specific and scattered.
TS28: cerebellum Strong Regionally restricted g00371_sj_g28_054_p7 , g00371_sj_g28_104_p7 , g00371_sj_g28_004_p7 Expression was region specific and scattered.
TS28: cerebral cortex Strong Widespread g00371_sj_g28_054_p7 , g00371_sj_g28_104_p7 , g00371_sj_g28_004_p7
TS28: hippocampus Strong Regionally restricted g00371_sj_g28_004_p7 , g00371_sj_g28_054_p7 , g00371_sj_g28_104_p7 Expression was region specific and scattered.
TS28: main olfactory bulb Strong Regionally restricted g00371_sj_g28_004_p7 , g00371_sj_g28_104_p7 , g00371_sj_g28_054_p7 Expression was region specific and scattered.

Specimen g00371 Adult: postnatal day 42 (more )
Structure Level Pattern Image Note
TS28: basal ganglia Present Widespread g00371_sj_g71_062_adc , g00371_sj_g39_075_ads , g00371_sj_g39_025_ads , g00371_sj_g71_012_adc , g00371_sj_g39_125_ads
TS28: brainstem Present Regionally restricted g00371_sj_g71_062_adc , g00371_sj_g71_012_adc , g00371_sj_g39_075_ads , g00371_sj_g39_025_ads , g00371_sj_g39_125_ads Expression was region specific and scattered.
TS28: choroid plexus Present Regionally restricted g00371_sj_g71_062_adc , g00371_sj_g39_075_ads , g00371_sj_g71_012_adc , g00371_sj_g39_125_ads , g00371_sj_g39_025_ads
TS28: hypothalamus Present Regionally restricted g00371_sj_g71_012_adc , g00371_sj_g39_075_ads , g00371_sj_g71_062_adc , g00371_sj_g39_025_ads , g00371_sj_g39_125_ads Expression was region specific and scattered.
TS28: meninges Present Regionally restricted g00371_sj_g71_062_adc , g00371_sj_g39_075_ads , g00371_sj_g39_125_ads , g00371_sj_g39_025_ads , g00371_sj_g71_012_adc
TS28: midbrain Present Widespread g00371_sj_g71_012_adc , g00371_sj_g39_075_ads , g00371_sj_g39_125_ads , g00371_sj_g39_025_ads , g00371_sj_g71_062_adc
TS28: retina Present Regionally restricted g00371_sj_g39_025_ads , g00371_sj_g39_075_ads , g00371_sj_g71_012_adc , g00371_sj_g39_125_ads , g00371_sj_g71_062_adc
TS28: spinal cord Present Regionally restricted g00371_sj_g39_075_ads , g00371_sj_g71_062_adc , g00371_sj_g39_025_ads , g00371_sj_g71_012_adc , g00371_sj_g39_125_ads Expression was region specific and scattered.
TS28: thalamus Present Regionally restricted g00371_sj_g39_125_ads , g00371_sj_g71_062_adc , g00371_sj_g71_012_adc , g00371_sj_g39_075_ads , g00371_sj_g39_025_ads Expression was region specific and scattered.
TS28: amygdala Strong Regionally restricted g00371_sj_g39_075_ads , g00371_sj_g71_012_adc , g00371_sj_g71_062_adc , g00371_sj_g39_125_ads , g00371_sj_g39_025_ads Expression was region specific and scattered.
TS28: cerebellum Strong Regionally restricted g00371_sj_g71_012_adc , g00371_sj_g39_125_ads , g00371_sj_g39_025_ads , g00371_sj_g71_062_adc , g00371_sj_g39_075_ads Expression was region specific and scattered.
TS28: cerebral cortex Strong Regionally restricted g00371_sj_g39_075_ads , g00371_sj_g71_062_adc , g00371_sj_g39_025_ads , g00371_sj_g71_012_adc , g00371_sj_g39_125_ads Expression was region specific and scattered.
TS28: hippocampus Strong Regionally restricted g00371_sj_g39_025_ads , g00371_sj_g39_125_ads , g00371_sj_g39_075_ads , g00371_sj_g71_012_adc , g00371_sj_g71_062_adc Expression was region specific and scattered.
TS28: main olfactory bulb Strong Regionally restricted g00371_sj_g39_075_ads , g00371_sj_g71_012_adc , g00371_sj_g71_062_adc , g00371_sj_g39_025_ads , g00371_sj_g39_125_ads Expression was region specific and scattered.


Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/12/2024
MGI 6.23
The Jackson Laboratory