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Gene Expression Data
Assay Details
Assay
Reference: J:162220 Magdaleno S, et al., BGEM: an in situ hybridization database of gene expression in the embryonic and adult mouse nervous system. PLoS Biol. 2006 Apr;4(4):e86
Assay type: RNA in situ
MGI Accession ID: MGI:4944656
Gene symbol: Col3a1
Gene name: collagen, type III, alpha 1
Probe: g00069
Probe preparation: Antisense RNA labelled with P33
Visualized with: Autoradiography
Results
Specimen g00069 E11.5: embryonic day 11.5 (more )
Structure Level Pattern Image Note
TS19: diencephalon Absent g00069_sj_g2_086_e11 , g00069_sj_g2_036_e11
TS19: midbrain Absent g00069_sj_g2_036_e11 , g00069_sj_g2_086_e11
TS19: hindbrain Absent g00069_sj_g2_036_e11 , g00069_sj_g2_086_e11
TS19: future spinal cord Absent g00069_sj_g2_086_e11 , g00069_sj_g2_036_e11
TS19: telencephalon Absent g00069_sj_g2_036_e11 , g00069_sj_g2_086_e11

Specimen g00069 E15.5: embryonic day 15.5 (more )
Structure Level Pattern Image Note
TS23: cerebellum Absent g00069_sj_g2_035_e15 , g00069_sj_g2_085_e15 , g00069_sj_g2_135_e15
TS23: ganglionic eminence Absent g00069_sj_g2_035_e15 , g00069_sj_g2_135_e15 , g00069_sj_g2_085_e15
TS23: hindbrain Absent g00069_sj_g2_135_e15 , g00069_sj_g2_085_e15 , g00069_sj_g2_035_e15
TS23: hippocampus Absent g00069_sj_g2_085_e15 , g00069_sj_g2_135_e15 , g00069_sj_g2_035_e15
TS23: hypothalamus Absent g00069_sj_g2_135_e15 , g00069_sj_g2_035_e15 , g00069_sj_g2_085_e15
TS23: midbrain Absent g00069_sj_g2_085_e15 , g00069_sj_g2_035_e15 , g00069_sj_g2_135_e15
TS23: neocortex Absent g00069_sj_g2_035_e15 , g00069_sj_g2_135_e15 , g00069_sj_g2_085_e15
TS23: main olfactory bulb Absent g00069_sj_g2_135_e15 , g00069_sj_g2_085_e15 , g00069_sj_g2_035_e15
TS23: retina Absent g00069_sj_g2_085_e15 , g00069_sj_g2_135_e15 , g00069_sj_g2_035_e15
TS23: spinal cord Absent g00069_sj_g2_135_e15 , g00069_sj_g2_035_e15 , g00069_sj_g2_085_e15

Specimen g00069 P7: postnatal day 7 (more )
Structure Level Pattern Image Note
TS28: choroid plexus Present Regionally restricted g00069_sj_g2_035_p7 , g00069_sj_g2_085_p7 , g00069_sj_g2_135_p7
TS28: hippocampus Present Scattered g00069_sj_g2_135_p7 , g00069_sj_g2_035_p7 , g00069_sj_g2_085_p7
TS28: meninges Strong Regionally restricted g00069_sj_g2_035_p7 , g00069_sj_g2_135_p7 , g00069_sj_g2_085_p7
TS28: amygdala Absent g00069_sj_g2_135_p7 , g00069_sj_g2_035_p7 , g00069_sj_g2_085_p7
TS28: basal ganglia Absent g00069_sj_g2_035_p7 , g00069_sj_g2_085_p7 , g00069_sj_g2_135_p7
TS28: brainstem Absent g00069_sj_g2_085_p7 , g00069_sj_g2_135_p7 , g00069_sj_g2_035_p7
TS28: cerebellum Absent g00069_sj_g2_035_p7 , g00069_sj_g2_085_p7 , g00069_sj_g2_135_p7
TS28: cerebral cortex Absent g00069_sj_g2_085_p7 , g00069_sj_g2_135_p7 , g00069_sj_g2_035_p7
TS28: hypothalamus Absent g00069_sj_g2_135_p7 , g00069_sj_g2_085_p7 , g00069_sj_g2_035_p7
TS28: midbrain Absent g00069_sj_g2_035_p7 , g00069_sj_g2_135_p7 , g00069_sj_g2_085_p7
TS28: main olfactory bulb Absent g00069_sj_g2_035_p7 , g00069_sj_g2_135_p7 , g00069_sj_g2_085_p7
TS28: retina Absent g00069_sj_g2_035_p7 , g00069_sj_g2_135_p7 , g00069_sj_g2_085_p7
TS28: spinal cord Absent g00069_sj_g2_135_p7 , g00069_sj_g2_035_p7 , g00069_sj_g2_085_p7
TS28: thalamus Absent g00069_sj_g2_035_p7 , g00069_sj_g2_135_p7 , g00069_sj_g2_085_p7

Specimen g00069 Adult: postnatal day 42 (more )
Structure Level Pattern Image Note
TS28: amygdala Weak Scattered g00069_sj_g45_026_adc , g00069_sj_g45_076_adc , g00069_sj_g45_026_ads , g00069_sj_g45_076_ads , g00069_sj_g45_126_ads Expression was weak or trace.
TS28: cerebellum Weak Scattered g00069_sj_g45_026_ads , g00069_sj_g45_126_ads , g00069_sj_g45_076_adc , g00069_sj_g45_026_adc , g00069_sj_g45_076_ads Expression was weak or trace.
TS28: brainstem Present Scattered g00069_sj_g45_076_ads , g00069_sj_g45_126_ads , g00069_sj_g45_026_adc , g00069_sj_g45_026_ads , g00069_sj_g45_076_adc
TS28: midbrain Present Scattered g00069_sj_g45_076_ads , g00069_sj_g45_026_ads , g00069_sj_g45_076_adc , g00069_sj_g45_126_ads , g00069_sj_g45_026_adc
TS28: spinal cord Present Scattered g00069_sj_g45_076_adc , g00069_sj_g45_026_ads , g00069_sj_g45_076_ads , g00069_sj_g45_026_adc , g00069_sj_g45_126_ads
TS28: thalamus Present Scattered g00069_sj_g45_076_ads , g00069_sj_g45_026_ads , g00069_sj_g45_126_ads , g00069_sj_g45_076_adc , g00069_sj_g45_026_adc
TS28: choroid plexus Strong Regionally restricted g00069_sj_g45_126_ads , g00069_sj_g45_026_ads , g00069_sj_g45_026_adc , g00069_sj_g45_076_adc , g00069_sj_g45_076_ads
TS28: meninges Strong Regionally restricted g00069_sj_g45_026_adc , g00069_sj_g45_076_ads , g00069_sj_g45_076_adc , g00069_sj_g45_126_ads , g00069_sj_g45_026_ads
TS28: basal ganglia Absent g00069_sj_g45_026_adc , g00069_sj_g45_076_ads , g00069_sj_g45_026_ads , g00069_sj_g45_076_adc , g00069_sj_g45_126_ads
TS28: cerebral cortex Absent g00069_sj_g45_076_adc , g00069_sj_g45_076_ads , g00069_sj_g45_026_adc , g00069_sj_g45_026_ads , g00069_sj_g45_126_ads
TS28: hippocampus Absent g00069_sj_g45_076_ads , g00069_sj_g45_026_adc , g00069_sj_g45_026_ads , g00069_sj_g45_076_adc , g00069_sj_g45_126_ads
TS28: hypothalamus Absent g00069_sj_g45_026_ads , g00069_sj_g45_076_adc , g00069_sj_g45_026_adc , g00069_sj_g45_126_ads , g00069_sj_g45_076_ads
TS28: main olfactory bulb Absent g00069_sj_g45_026_ads , g00069_sj_g45_076_adc , g00069_sj_g45_076_ads , g00069_sj_g45_026_adc , g00069_sj_g45_126_ads
TS28: retina Absent g00069_sj_g45_076_adc , g00069_sj_g45_126_ads , g00069_sj_g45_026_adc , g00069_sj_g45_076_ads , g00069_sj_g45_026_ads


Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
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last database update
10/19/2021
MGI 6.17
The Jackson Laboratory