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Gene Expression Data
Assay Details
Assay
Reference: J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
Assay type: RNA in situ
MGI Accession ID: MGI:4826800
Gene symbol: Nrxn1
Gene name: neurexin I
Probe: MGC clone 54438
Probe preparation: Antisense RNA labelled with digoxigenin
Visualized with: Alkaline phosphatase
Assay notes: Cryosections of fresh frozen material were fixed in 4% paraformaldehyde for 20 min. before further processing. A tyramide-biotin/streptavidin amplification step was included in the in situ hybridization procedure.
Results
Specimen euxassay_005585_01: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: forebrain Strong Uniform euxassay_005585_01
TS23: trunk mesenchyme Moderate Regionally restricted euxassay_005585_01
TS23: leg Moderate Regionally restricted euxassay_005585_01
TS23: arm Moderate Regionally restricted euxassay_005585_01

Specimen euxassay_005585_02: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: neural retina Strong Regionally restricted euxassay_005585_02
TS23: forebrain Strong Uniform euxassay_005585_02
TS23: leg Moderate Regionally restricted euxassay_005585_02
TS23: trunk mesenchyme Moderate Regionally restricted euxassay_005585_02

Specimen euxassay_005585_03: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: trigeminal ganglion Strong Regionally restricted euxassay_005585_03
TS23: neural retina Strong Regionally restricted euxassay_005585_03
TS23: forebrain Strong Uniform euxassay_005585_03
TS23: leg Moderate Regionally restricted euxassay_005585_03
TS23: trunk mesenchyme Moderate Regionally restricted euxassay_005585_03

Specimen euxassay_005585_04: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: trigeminal ganglion Strong Regionally restricted euxassay_005585_04
TS23: neural retina Strong Regionally restricted euxassay_005585_04
TS23: forebrain Strong Uniform euxassay_005585_04
TS23: hindbrain Strong Uniform euxassay_005585_04
TS23: trunk mesenchyme Moderate Regionally restricted euxassay_005585_04
TS23: leg Moderate Regionally restricted euxassay_005585_04

Specimen euxassay_005585_05: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: trigeminal ganglion Strong Regionally restricted euxassay_005585_05
TS23: facial ganglion Strong Regionally restricted euxassay_005585_05
TS23: forebrain Strong Uniform euxassay_005585_05
TS23: hindbrain Strong Uniform euxassay_005585_05
TS23: midbrain Strong Uniform euxassay_005585_05
TS23: oral epithelium Moderate Regionally restricted euxassay_005585_05
TS23: trunk mesenchyme Moderate Regionally restricted euxassay_005585_05
TS23: leg Moderate Regionally restricted euxassay_005585_05

Specimen euxassay_005585_06: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: glossopharyngeal ganglion Strong Regionally restricted euxassay_005585_06
TS23: facial ganglion Strong Regionally restricted euxassay_005585_06
TS23: vestibulo-cochlear ganglion Strong Regionally restricted euxassay_005585_06
TS23: trigeminal ganglion Strong Regionally restricted euxassay_005585_06
TS23: forebrain Strong Uniform euxassay_005585_06
TS23: hindbrain Strong Uniform euxassay_005585_06
TS23: midbrain Strong Uniform euxassay_005585_06
TS23: oral epithelium Weak Regionally restricted euxassay_005585_06
TS23: trunk mesenchyme Moderate Regionally restricted euxassay_005585_06

Specimen euxassay_005585_07: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: vestibulo-cochlear ganglion Strong Regionally restricted euxassay_005585_07
TS23: glossopharyngeal ganglion Strong Regionally restricted euxassay_005585_07
TS23: trigeminal ganglion Strong Regionally restricted euxassay_005585_07
TS23: dorsal root ganglion Strong Regionally restricted euxassay_005585_07
TS23: forebrain Strong Uniform euxassay_005585_07
TS23: hindbrain Strong Uniform euxassay_005585_07
TS23: midbrain Strong Uniform euxassay_005585_07
TS23: spinal cord Strong Uniform euxassay_005585_07
TS23: oral epithelium Weak Regionally restricted euxassay_005585_07
TS23: trunk mesenchyme Moderate Regionally restricted euxassay_005585_07

Specimen euxassay_005585_08: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: vagus ganglion Strong Regionally restricted euxassay_005585_08
TS23: trigeminal ganglion Strong Regionally restricted euxassay_005585_08
TS23: vestibulo-cochlear ganglion Strong Regionally restricted euxassay_005585_08
TS23: dorsal root ganglion Strong Regionally restricted euxassay_005585_08
TS23: forebrain Strong Uniform euxassay_005585_08
TS23: hindbrain Strong Uniform euxassay_005585_08
TS23: midbrain Strong Uniform euxassay_005585_08
TS23: spinal cord Strong Uniform euxassay_005585_08
TS23: olfactory epithelium Moderate Regionally restricted euxassay_005585_08
TS23: cervical ganglion Moderate Regionally restricted euxassay_005585_08
TS23: oral epithelium Weak Regionally restricted euxassay_005585_08
TS23: trunk mesenchyme Moderate Regionally restricted euxassay_005585_08

Specimen euxassay_005585_09: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: trigeminal nerve Strong Regionally restricted euxassay_005585_09
TS23: trigeminal ganglion Strong Regionally restricted euxassay_005585_09
TS23: dorsal root ganglion Strong Regionally restricted euxassay_005585_09
TS23: forebrain Strong Uniform euxassay_005585_09
TS23: hindbrain Strong Uniform euxassay_005585_09
TS23: midbrain Strong Uniform euxassay_005585_09
TS23: spinal cord Strong Uniform euxassay_005585_09
TS23: olfactory epithelium Strong Regionally restricted euxassay_005585_09
TS23: cervico-thoracic ganglion Moderate Regionally restricted euxassay_005585_09

Specimen euxassay_005585_10: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: dorsal root ganglion Moderate Regionally restricted euxassay_005585_10
TS23: forebrain Strong Uniform euxassay_005585_10
TS23: hindbrain Strong Uniform euxassay_005585_10
TS23: midbrain Strong Uniform euxassay_005585_10
TS23: spinal cord Strong Uniform euxassay_005585_10
TS23: olfactory epithelium Strong Regionally restricted euxassay_005585_10

Specimen euxassay_005585_11: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: forebrain Strong Uniform euxassay_005585_11
TS23: hindbrain Strong Uniform euxassay_005585_11
TS23: midbrain Strong Uniform euxassay_005585_11
TS23: spinal cord Strong Uniform euxassay_005585_11
TS23: olfactory epithelium Strong Regionally restricted euxassay_005585_11
TS23: nasal cavity respiratory epithelium Strong Regionally restricted euxassay_005585_11
TS23: thoracic ganglion Moderate Regionally restricted euxassay_005585_11
TS23: vomeronasal organ Moderate Regionally restricted euxassay_005585_11

Specimen euxassay_005585_12: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: forebrain Strong Uniform euxassay_005585_12
TS23: hindbrain Strong Uniform euxassay_005585_12
TS23: midbrain Strong Uniform euxassay_005585_12
TS23: spinal cord Strong Uniform euxassay_005585_12
TS23: olfactory epithelium Strong Regionally restricted euxassay_005585_12
TS23: nasal cavity respiratory epithelium Strong Regionally restricted euxassay_005585_12
TS23: thoracic ganglion Moderate Regionally restricted euxassay_005585_12

Specimen euxassay_005585_13: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: forebrain Strong Uniform euxassay_005585_13
TS23: hindbrain Strong Uniform euxassay_005585_13
TS23: midbrain Strong Uniform euxassay_005585_13
TS23: spinal cord Strong Uniform euxassay_005585_13

Specimen euxassay_005585_14: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: dorsal root ganglion Moderate Regionally restricted euxassay_005585_14
TS23: forebrain Strong Uniform euxassay_005585_14
TS23: hindbrain Strong Uniform euxassay_005585_14
TS23: midbrain Strong Uniform euxassay_005585_14
TS23: spinal cord Strong Uniform euxassay_005585_14
TS23: olfactory epithelium Strong Regionally restricted euxassay_005585_14
TS23: nasal cavity respiratory epithelium Strong Regionally restricted euxassay_005585_14
TS23: vomeronasal organ Moderate Regionally restricted euxassay_005585_14

Specimen euxassay_005585_15: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: dorsal root ganglion Strong Regionally restricted euxassay_005585_15
TS23: forebrain Strong Uniform euxassay_005585_15
TS23: hindbrain Strong Uniform euxassay_005585_15
TS23: midbrain Strong Uniform euxassay_005585_15
TS23: nasal cavity respiratory epithelium Strong Regionally restricted euxassay_005585_15
TS23: olfactory epithelium Strong Regionally restricted euxassay_005585_15

Specimen euxassay_005585_16: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: trigeminal ganglion Strong Regionally restricted euxassay_005585_16
TS23: vagus ganglion Strong Regionally restricted euxassay_005585_16
TS23: trigeminal nerve Strong Regionally restricted euxassay_005585_16
TS23: vestibulo-cochlear ganglion Strong Regionally restricted euxassay_005585_16
TS23: dorsal root ganglion Strong Regionally restricted euxassay_005585_16
TS23: forebrain Strong Uniform euxassay_005585_16
TS23: hindbrain Strong Uniform euxassay_005585_16
TS23: midbrain Strong Uniform euxassay_005585_16
TS23: olfactory epithelium Strong Regionally restricted euxassay_005585_16
TS23: trunk mesenchyme Moderate Regionally restricted euxassay_005585_16

Specimen euxassay_005585_17: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: glossopharyngeal ganglion Strong Regionally restricted euxassay_005585_17
TS23: vestibulo-cochlear ganglion Strong Regionally restricted euxassay_005585_17
TS23: trigeminal ganglion Strong Regionally restricted euxassay_005585_17
TS23: forebrain Strong Uniform euxassay_005585_17
TS23: hindbrain Strong Uniform euxassay_005585_17
TS23: midbrain Strong Uniform euxassay_005585_17
TS23: olfactory epithelium Strong Regionally restricted euxassay_005585_17
TS23: trunk mesenchyme Moderate Regionally restricted euxassay_005585_17

Specimen euxassay_005585_18: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: vestibulo-cochlear ganglion Strong Regionally restricted euxassay_005585_18
TS23: trigeminal ganglion Strong Regionally restricted euxassay_005585_18
TS23: facial ganglion Strong Regionally restricted euxassay_005585_18
TS23: forebrain Strong Uniform euxassay_005585_18
TS23: hindbrain Strong Uniform euxassay_005585_18
TS23: midbrain Strong Uniform euxassay_005585_18
TS23: olfactory epithelium Moderate Regionally restricted euxassay_005585_18
TS23: trunk mesenchyme Moderate Regionally restricted euxassay_005585_18

Specimen euxassay_005585_19: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: trigeminal ganglion Strong Regionally restricted euxassay_005585_19
TS23: facial ganglion Strong Regionally restricted euxassay_005585_19
TS23: forebrain Strong Uniform euxassay_005585_19
TS23: hindbrain Strong Uniform euxassay_005585_19
TS23: oral epithelium Weak Regionally restricted euxassay_005585_19
TS23: trunk mesenchyme Moderate Regionally restricted euxassay_005585_19
TS23: leg Moderate Regionally restricted euxassay_005585_19

Specimen euxassay_005585_20: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: trigeminal ganglion Strong Regionally restricted euxassay_005585_20
TS23: facial ganglion Strong Regionally restricted euxassay_005585_20
TS23: forebrain Strong Uniform euxassay_005585_20
TS23: hindbrain Strong Uniform euxassay_005585_20
TS23: oral epithelium Moderate Regionally restricted euxassay_005585_20
TS23: trunk mesenchyme Moderate Regionally restricted euxassay_005585_20
TS23: leg Moderate Regionally restricted euxassay_005585_20

Specimen euxassay_005585_21: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: trigeminal ganglion Strong Regionally restricted euxassay_005585_21
TS23: forebrain Strong Uniform euxassay_005585_21
TS23: leg Moderate Regionally restricted euxassay_005585_21
TS23: trunk mesenchyme Moderate Regionally restricted euxassay_005585_21

Specimen euxassay_005585_22: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: neural retina Strong Regionally restricted euxassay_005585_22
TS23: forebrain Strong Uniform euxassay_005585_22
TS23: leg Moderate Regionally restricted euxassay_005585_22
TS23: trunk mesenchyme Moderate Regionally restricted euxassay_005585_22

Specimen euxassay_005585_23: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: neural retina Strong Regionally restricted euxassay_005585_23
TS23: forebrain Strong Uniform euxassay_005585_23
TS23: trunk mesenchyme Moderate Regionally restricted euxassay_005585_23
TS23: arm Moderate Regionally restricted euxassay_005585_23
TS23: leg Moderate Regionally restricted euxassay_005585_23


Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
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last database update
01/14/2020
MGI 6.14
The Jackson Laboratory