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Gene Expression Data
Assay Details
Assay
Reference: J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
Assay type: RNA in situ
MGI Accession ID: MGI:4823857
Gene symbol: Chrna5
Gene name: cholinergic receptor, nicotinic, alpha polypeptide 5
Probe: T35141
Probe preparation: Antisense RNA labelled with digoxigenin
Visualized with: Alkaline phosphatase
Assay notes: Cryosections of fresh frozen material were fixed in 4% paraformaldehyde for 20 min. before further processing. A tyramide-biotin/streptavidin amplification step was included in the in situ hybridization procedure.
Results
Specimen euxassay_008363_02: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: rest of cerebellum mantle layer Moderate Single cells euxassay_008363_02

Specimen euxassay_008363_03: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: rest of cerebellum mantle layer Weak Single cells euxassay_008363_03

Specimen euxassay_008363_04: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: rest of cerebellum mantle layer Weak Single cells euxassay_008363_04
TS23: stomach Weak Regionally restricted euxassay_008363_04

Specimen euxassay_008363_05: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: rest of cerebellum mantle layer Moderate Single cells euxassay_008363_05
TS23: stomach Weak Regionally restricted euxassay_008363_05

Specimen euxassay_008363_06: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: rest of cerebellum mantle layer Moderate Single cells euxassay_008363_06
TS23: midbrain mantle layer Moderate Single cells euxassay_008363_06
TS23: stomach Moderate Regionally restricted euxassay_008363_06

Specimen euxassay_008363_07: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: rest of cerebellum mantle layer Moderate Single cells euxassay_008363_07
TS23: pons mantle layer Weak Single cells euxassay_008363_07
TS23: midbrain mantle layer Moderate Single cells euxassay_008363_07
TS23: stomach Moderate Regionally restricted euxassay_008363_07

Specimen euxassay_008363_08: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: rest of cerebellum mantle layer Moderate Single cells euxassay_008363_08
TS23: pons mantle layer Weak Single cells euxassay_008363_08
TS23: midbrain mantle layer Moderate Single cells euxassay_008363_08
TS23: vagus ganglion Weak Single cells euxassay_008363_08
TS23: pharynx Weak Regionally restricted euxassay_008363_08
TS23: midgut Weak Regionally restricted euxassay_008363_08

Specimen euxassay_008363_09: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: rest of cerebellum mantle layer Strong Single cells euxassay_008363_09
TS23: rest of cerebellum ventricular layer Strong Single cells euxassay_008363_09
TS23: pons mantle layer Strong Single cells euxassay_008363_09
TS23: midbrain mantle layer Moderate Single cells euxassay_008363_09
TS23: vagus ganglion Moderate Single cells euxassay_008363_09
TS23: stomach Moderate Regionally restricted euxassay_008363_09
TS23: midgut Moderate Regionally restricted euxassay_008363_09

Specimen euxassay_008363_10: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: rest of cerebellum ventricular layer Strong Single cells euxassay_008363_10
TS23: rest of cerebellum mantle layer Strong Single cells euxassay_008363_10
TS23: pons mantle layer Strong Single cells euxassay_008363_10
TS23: midbrain mantle layer Moderate Single cells euxassay_008363_10
TS23: trigeminal nerve Weak Single cells euxassay_008363_10
TS23: stomach Moderate Regionally restricted euxassay_008363_10
TS23: midgut Moderate Regionally restricted euxassay_008363_10

Specimen euxassay_008363_11: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: rest of cerebellum ventricular layer Strong Single cells euxassay_008363_11
TS23: pons mantle layer Strong Single cells euxassay_008363_11
TS23: midbrain mantle layer Moderate Single cells euxassay_008363_11
TS23: trigeminal nerve Weak Single cells euxassay_008363_11
TS23: midgut Moderate Regionally restricted euxassay_008363_11
TS23: stomach Moderate Regionally restricted euxassay_008363_11

Specimen euxassay_008363_12: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: rest of cerebellum ventricular layer Moderate Single cells euxassay_008363_12
TS23: pons mantle layer Strong Single cells euxassay_008363_12
TS23: midgut Weak Regionally restricted euxassay_008363_12

Specimen euxassay_008363_13: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: rest of cerebellum mantle layer Strong Single cells euxassay_008363_13
TS23: pons mantle layer Strong Single cells euxassay_008363_13
TS23: midgut Weak Regionally restricted euxassay_008363_13
TS23: hindgut Weak Regionally restricted euxassay_008363_13

Specimen euxassay_008363_14: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: rest of cerebellum mantle layer Strong Single cells euxassay_008363_14
TS23: pons mantle layer Strong Single cells euxassay_008363_14
TS23: midgut Weak Regionally restricted euxassay_008363_14
TS23: hindgut Weak Regionally restricted euxassay_008363_14

Specimen euxassay_008363_15: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: rest of cerebellum mantle layer Strong Single cells euxassay_008363_15
TS23: midgut Weak Regionally restricted euxassay_008363_15
TS23: hindgut Weak Regionally restricted euxassay_008363_15

Specimen euxassay_008363_16: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: rest of cerebellum ventricular layer Moderate Single cells euxassay_008363_16
TS23: rest of cerebellum mantle layer Moderate Single cells euxassay_008363_16
TS23: pons mantle layer Moderate Single cells euxassay_008363_16
TS23: midbrain mantle layer Moderate Single cells euxassay_008363_16

Specimen euxassay_008363_17: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: rest of cerebellum ventricular layer Moderate Single cells euxassay_008363_17
TS23: rest of cerebellum mantle layer Moderate Single cells euxassay_008363_17
TS23: pons mantle layer Moderate Single cells euxassay_008363_17
TS23: midbrain mantle layer Moderate Single cells euxassay_008363_17
TS23: vagus ganglion Moderate Single cells euxassay_008363_17
TS23: midgut Weak Regionally restricted euxassay_008363_17
TS23: hindgut Weak Regionally restricted euxassay_008363_17

Specimen euxassay_008363_18: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: rest of cerebellum mantle layer Weak Single cells euxassay_008363_18
TS23: rest of cerebellum ventricular layer Weak Single cells euxassay_008363_18
TS23: midbrain mantle layer Weak Single cells euxassay_008363_18
TS23: vagus ganglion Moderate Single cells euxassay_008363_18
TS23: trigeminal nerve Moderate Single cells euxassay_008363_18
TS23: hindgut Weak Regionally restricted euxassay_008363_18
TS23: midgut Weak Regionally restricted euxassay_008363_18

Specimen euxassay_008363_19: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: midbrain mantle layer Weak Single cells euxassay_008363_19
TS23: midgut Weak Regionally restricted euxassay_008363_19

Specimen euxassay_008363_21: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: rest of cerebellum mantle layer Weak Single cells euxassay_008363_21

Specimen euxassay_008363_22: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: rest of cerebellum mantle layer Weak Single cells euxassay_008363_22

Specimen euxassay_008363_23: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: rest of cerebellum mantle layer Weak Single cells euxassay_008363_23


Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
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last database update
11/05/2019
MGI 6.14
The Jackson Laboratory