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Gene Expression Data
Assay Details
Assay
Reference: J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
Assay type: RNA in situ
MGI Accession ID: MGI:4824589
Gene symbol: Ephb1
Gene name: Eph receptor B1
Probe: MH2229 probe 1882
Probe preparation: Antisense labelled with digoxigenin RNA
Visualized with: Alkaline phosphatase
Assay notes: Cryosections of fresh frozen material were fixed in 4% paraformaldehyde for 20 min. before further processing. A tyramide-biotin/streptavidin amplification step was included in the in situ hybridization procedure.
Results
Specimen euxassay_018955_01: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: neural retina Weak Regionally restricted euxassay_018955_01
Specimen euxassay_018955_02: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: neural retina Weak Regionally restricted euxassay_018955_02
Specimen euxassay_018955_03: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: cerebral cortex mantle layer Weak Regionally restricted euxassay_018955_03
TS23: neural retina Weak Regionally restricted euxassay_018955_03
Specimen euxassay_018955_04: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: cerebral cortex mantle layer Weak Regionally restricted euxassay_018955_04
TS23: telencephalon mantle layer Weak Regionally restricted euxassay_018955_04
TS23: foot mesenchyme Weak Regionally restricted euxassay_018955_04
Specimen euxassay_018955_05: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: rest of cerebellum ventricular layer Weak Regionally restricted euxassay_018955_05
Specimen euxassay_018955_06: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: cerebral cortex mantle layer Weak Regionally restricted euxassay_018955_06
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_018955_06
TS23: telencephalon ventricular layer Moderate Regionally restricted euxassay_018955_06
TS23: rest of cerebellum ventricular layer Weak Regionally restricted euxassay_018955_06
Specimen euxassay_018955_07: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Moderate Regionally restricted euxassay_018955_07
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_018955_07
TS23: cerebral cortex mantle layer Weak Regionally restricted euxassay_018955_07
TS23: rest of cerebellum ventricular layer Weak Regionally restricted euxassay_018955_07
Specimen euxassay_018955_08: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Weak Regionally restricted euxassay_018955_08
Specimen euxassay_018955_09: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Weak Regionally restricted euxassay_018955_09
TS23: pons ventricular layer Moderate Regionally restricted euxassay_018955_09
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_018955_09
Specimen euxassay_018955_10: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Moderate Regionally restricted euxassay_018955_10
TS23: pons ventricular layer Moderate Regionally restricted euxassay_018955_10
TS23: pons mantle layer Moderate Regionally restricted euxassay_018955_10
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_018955_10
TS23: midbrain ventricular layer Moderate Regionally restricted euxassay_018955_10
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_018955_10
TS23: medulla oblongata basal plate mantle layer Weak Regionally restricted euxassay_018955_10 facial motor nucleus
Specimen euxassay_018955_11: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Moderate Regionally restricted euxassay_018955_11
TS23: pons ventricular layer Moderate Regionally restricted euxassay_018955_11
TS23: pons mantle layer Moderate Regionally restricted euxassay_018955_11
TS23: midbrain ventricular layer Moderate Regionally restricted euxassay_018955_11
TS23: midbrain mantle layer Weak Regionally restricted euxassay_018955_11
TS23: diencephalon lateral wall mantle layer Weak Regionally restricted euxassay_018955_11
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_018955_11 facial motor nucleus
Specimen euxassay_018955_12: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: pons ventricular layer Weak Regionally restricted euxassay_018955_12
TS23: midbrain ventricular layer Moderate Regionally restricted euxassay_018955_12
TS23: diencephalon lateral wall ventricular layer Moderate Regionally restricted euxassay_018955_12
Specimen euxassay_018955_13: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: pons ventricular layer Weak Regionally restricted euxassay_018955_13
TS23: midbrain marginal layer Moderate Regionally restricted euxassay_018955_13
TS23: diencephalon lateral wall ventricular layer Moderate Regionally restricted euxassay_018955_13
TS23: medulla oblongata basal plate ventricular layer Moderate Regionally restricted euxassay_018955_13
Specimen euxassay_018955_14: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: diencephalon lateral wall ventricular layer Moderate Regionally restricted euxassay_018955_14
TS23: medulla oblongata basal plate ventricular layer Moderate Regionally restricted euxassay_018955_14
Specimen euxassay_018955_15: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: pons ventricular layer Weak Regionally restricted euxassay_018955_15
TS23: midbrain ventricular layer Moderate Regionally restricted euxassay_018955_15
TS23: diencephalon lateral wall ventricular layer Moderate Regionally restricted euxassay_018955_15
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_018955_15
TS23: medulla oblongata basal plate ventricular layer Moderate Regionally restricted euxassay_018955_15
TS23: spinal cord floor plate Weak Regionally restricted euxassay_018955_15
Specimen euxassay_018955_16: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Weak Regionally restricted euxassay_018955_16
TS23: pons ventricular layer Weak Regionally restricted euxassay_018955_16
TS23: midbrain ventricular layer Moderate Regionally restricted euxassay_018955_16
Specimen euxassay_018955_17: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Weak Regionally restricted euxassay_018955_17
TS23: pons ventricular layer Moderate Regionally restricted euxassay_018955_17
TS23: pons mantle layer Moderate Regionally restricted euxassay_018955_17
TS23: midbrain ventricular layer Moderate Regionally restricted euxassay_018955_17
TS23: midbrain mantle layer Weak Regionally restricted euxassay_018955_17
TS23: diencephalon lateral wall mantle layer Weak Regionally restricted euxassay_018955_17
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_018955_17 facial motor nucleus
Specimen euxassay_018955_18: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Weak Regionally restricted euxassay_018955_18
TS23: rest of cerebellum ventricular layer Weak Regionally restricted euxassay_018955_18
TS23: pons ventricular layer Moderate Regionally restricted euxassay_018955_18
TS23: diencephalon lateral wall mantle layer Weak Regionally restricted euxassay_018955_18
TS23: midbrain mantle layer Weak Regionally restricted euxassay_018955_18
TS23: midbrain ventricular layer Moderate Regionally restricted euxassay_018955_18
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_018955_18 facial motor nucleus
Specimen euxassay_018955_19: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Weak Regionally restricted euxassay_018955_19
TS23: rest of cerebellum ventricular layer Weak Regionally restricted euxassay_018955_19
TS23: pons ventricular layer Weak Regionally restricted euxassay_018955_19
TS23: pons mantle layer Weak Regionally restricted euxassay_018955_19
TS23: midbrain mantle layer Weak Regionally restricted euxassay_018955_19
TS23: diencephalon lateral wall mantle layer Weak Regionally restricted euxassay_018955_19
Specimen euxassay_018955_20: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Weak Regionally restricted euxassay_018955_20
TS23: telencephalon mantle layer Weak Regionally restricted euxassay_018955_20
TS23: rest of cerebellum ventricular layer Weak Regionally restricted euxassay_018955_20
TS23: midbrain mantle layer Weak Regionally restricted euxassay_018955_20
Specimen euxassay_018955_21: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Moderate Regionally restricted euxassay_018955_21
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_018955_21
TS23: rest of cerebellum ventricular layer Weak Regionally restricted euxassay_018955_21
TS23: foot mesenchyme Moderate Regionally restricted euxassay_018955_21
Specimen euxassay_018955_22: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Moderate Regionally restricted euxassay_018955_22
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_018955_22
TS23: cerebral cortex mantle layer Moderate Regionally restricted euxassay_018955_22
TS23: rest of cerebellum ventricular layer Weak Regionally restricted euxassay_018955_22
Specimen euxassay_018955_23: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon mantle layer Weak Regionally restricted euxassay_018955_23
TS23: cerebral cortex mantle layer Weak Regionally restricted euxassay_018955_23
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
05/07/2024
MGI 6.23 		The Jackson Laboratory