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MTF#129 Probe Detail
Nucleotide
Probe/Clone
  • Name
    MTF#129
  • Sequence Type
    cDNA
  • ID
    MGI:3506012
  • Vector Type
    Plasmid
  • Insert Site
    EcoRI/HindIII
  • Insert Size
    0.729kb
  • Note
    Fragment was generated by PCR with primers CCGGAATTCACGGAGGACGAGGGGAGGAGG and CCCAAGCTTCTGGGTGGCCGTGAAGATGTCC. These primers contain adaptor sequences. The 5' primer does not match the proposed gene but the template sequence does. Template sequence provided by Paul Gray:
    TGNNNNNNNGNNCNNCAGTGTGATGGATATCTGCAGAATTCGGCTTGTTCTCGCCCTACG
    CTGGCTCCACTGCCTTCACGGCTCCCTCGCCCGGCTACAACTCGCACCTCCAGTACGGCG
    CCGACCCCGCGGCTGCGGCCGCCGCTGCCTTCTCTTACGTGGGCTCTCCCTACGACCACA
    CTCCCGGTATGGCAGGTTCCTTGGGATATCACCCTTATGCAGCACCTCTGGGCTCCTATC
    CTTATGGGGACCCCGCGTACCGGAAGAACGCCACTCGGGACGCTACAGCCACTCTCAAGG
    CCTGGCTCAACGAGCACCGCAAGAACCCGTACCCCACCAAGGGAGAGAAGATCATGCTGG
    CCATTATCACCAAGATGACCCTCACCCAGGTGTCCACCTGGTTTGCCAACGCGCGCCGGC
    GCCTCAAGAAAGAGAACAAGATGACGTGGACGCCACGGAACCGCAGCGAGGACGAGGAGG
    AGGAGGAGAACATCGATCTGGAGAAGAACGACGANGACGANCCACAGAAGCCCGAGGACA
    AGGGCGACCTCGAGGGCCCCGGAATCNGGGANGAGTANAGCNANANGGCGNACTGCNGGC
    CTGCNAANGGCTGCANGGNGNCNGCTCANNCACGNNCGGNAAAAGAANGACGGAAAGGCA
    GCCNNCAACCAACTCGGGATTTTTAAGGGNGTCGTTCCTCTCGAAAGTCCNCCNCCGCAT
    NNANNCTGCATNNANGGCCCCCATGNTTNCNGCCGTGGNNNTATATCCCTNCCCNNCGGN
    CTTGGGGTTNCTGAACAACCCGCCCCCGCNCCCTTGGGNAGAAAANAANNNTNGCGGTTA
    CCCCTCCCCCNNACNCCCCGCGNGGNGCNTGNTGCNATATTCTCCGAAATNATNNNCATN
    AGNCNNNCNNNCCTGGNGGTGTNGCNNNNNNGTTCTATCTCTNAAANGNNAGCGAANTTC
    CCCNAAAAGNATTTGCGTGTGTACNCANCANAGACTCTTGNGGNANNGNGCCNTNTGAAT
    ATACATTGNNNNGANTATATTTNTCCCTATAANANANGGGGGGNNCCCCCCCCTNANAAC
    ACAANNGCCCTTTNTGGGNGTTTNTAANTAANTNTGTGTGGGNNNCCTNNNATATTCTGT
    AGNTTGTTCNCCCNCGNGGGTGGTNAAAAANAAACNNGANGAAAAANTCNCGGACCTCCC
    CCNNNAAATTNNCNCCCCNGNCNTNAAAATNTCNNGNTAGGNNTTNGGGNNNNNTNATGC
    TNNNCAATNACTTNTTTCANNTACCNCCCCCCCCCNGGGANCGNGTGNTANNTAATTATA
    TAACGAAGNNGTNNCNCCTNANNCNCCTCTTCNATNCTCATNNNANTCNNTGTTGATTNG
    CCAGAACNCCTTNAAANGGANTNACCANCTTTTNTTNTAANCCCCNCCCGGGTANGAAAA
    NCANGGCTCNTNAAAAANACAAATANTTNCNTATTNCAACACTNACCACAATTNTCCNAN
    NATNGGANTTGNCGGGC
  • Synonyms
    GUDMAP:5272 probe, maprobe:90
Source
  • Species
    mouse, laboratory
  • Strain
    C57BL
  • Age
    embryonic day 13.5
  • Tissue
    brain
Genes
Irx5 Iroquois homeobox 5
Expression
  • Assay Results
    54
References
J:91257 Gray PA, et al., Mouse Brain Organization Revealed Through Direct Genome-Scale TF Expression Analysis. Science. 2004 Dec 24;306(5705):2255-2257
J:171409 GUDMAP Consortium, GUDMAP: the GenitoUrinary Development Molecular Anatomy Project. www.gudmap.org. 2004;
J:168654 Chung YC, et al., Screening large numbers of expression patterns of transcription factors in late stages of the mouse thymus. Gene Expr Patterns. 2011 Jan-Feb;11(1-2):84-92
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Funding Information
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Send questions and comments to User Support. 		last database update
05/21/2024
MGI 6.23 		The Jackson Laboratory