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Gene Expression Data
Assay Details
Assay
Reference: J:60432 Kolle G, et al., CRIM1, a novel gene encoding a cysteine-rich repeat protein, is developmentally regulated and implicated in vertebrate CNS development and organogenesis. Mech Dev. 2000 Feb;90(2):181-93
Assay type: RNA in situ
MGI Accession ID: MGI:3033361
Gene symbol: Crim1
Gene name: cysteine rich transmembrane BMP regulator 1
Probe: Crim1 cDNA
Probe preparation: Antisense labelled with digoxigenin RNA
Results
Specimen Not Shown: embryonic day 7.5 (more )
Structure Level Pattern Image Note
TS11: embryo Absent

Specimen Not Shown: embryonic day 8.5 (more )
Structure Level Pattern Image Note
TS13: embryo Absent

Specimen 3A: embryonic day 9.0 (more )
Structure Level Pattern Image Note
TS14: trunk somite Present Regionally restricted 3A Expression is in the central portion of rostrally located somites of the body.

Specimen 3B: embryonic day 10.0 (more )
Structure Level Pattern Image Note
TS16: future hindbrain Present Regionally restricted 3B Expression is in the ventral region.
TS16: future midbrain Present Regionally restricted 3B Expression is in the ventral region.

Specimen 3C: embryonic day 11.0 (more )
Structure Level Pattern Image Note
TS18: trunk somite Present 3C Expression is in more caudal somites.
TS18: lens vesicle Present 3C
TS18: neural tube Present Regionally restricted 3C Expression is in the ventral aspect.
TS18: 1st branchial arch mandibular component Present Regionally restricted 3C Expression is in a portion of the developing tooth primordia.
TS18: 1st branchial arch maxillary component Present Regionally restricted 3C Expression is in a portion of the developing tooth primordia.
TS18: otocyst Present Regionally restricted 3C Expression is in a portion of the otic vesicle.

Specimen 3D: embryonic day 13.5 (more )
Structure Level Pattern Image Note
TS21: lens Present 3D
TS21: pinna Present 3D
TS21: tooth Present 3D
TS21: vibrissa Present 3D
TS21: nose Present Regionally restricted 3D Expression is in the nasal epithelium.

Specimen 3E: embryonic day 11.5 (more )
Note: Sagittaly bisected head.
Structure Level Pattern Image Note
TS19: lens vesicle Present 3E
TS19: neural tube Present Regionally restricted 3E
TS19: mandibular process Present Regionally restricted 3E Expression is in a portion of the developing tooth primordia.
TS19: maxillary process Present Regionally restricted 3E Expression is in a portion of the developing tooth primordia.
TS19: inner ear Present Regionally restricted 3E Expression is in a portion of the otic vesicle.
TS19: diencephalon Present Regionally restricted 3E Expression is in the pretectum and zona limitans and in a region posterior to the optic stalk.
TS19: metencephalon roof Present Regionally restricted 3E Expression is in the roof of the anterior hindbrain.
TS19: metencephalon floor plate Present 3E
TS19: midbrain floor plate Present 3E
TS19: myelencephalon floor plate Present 3E

Specimen 3F: embryonic day 13.5 (more )
Note: Sagittaly bisected head.
Structure Level Pattern Image Note
TS21: tooth Present 3F
TS21: medulla oblongata floor plate Strong 3F
TS21: metencephalon floor plate Strong 3F
TS21: midbrain floor plate Strong 3F
TS21: hindbrain Strong Regionally restricted 3F Expression is in an intermediate region.
TS21: diencephalon Strong Regionally restricted 3F Expression is in the dorsal midline of the rostral end of the diencephalon.

Specimen 3G: embryonic day 13.5 (more )
Note: Sagittaly bisected head.
Structure Level Pattern Image Note
TS21: tooth Present 3G
TS21: nasal cavity epithelium Present 3G

Specimen 3H: embryonic day 13.5 (more )
Structure Level Pattern Image Note
TS21: lens Present 3H

Specimen 3I: embryonic day 13.5 (more )
Structure Level Pattern Image Note
TS21: pinna Present 3I

Specimen 3J: embryonic day 11.5 (more )
Structure Level Pattern Image Note
TS19: metencephalon floor plate Present 3J
TS19: myelencephalon floor plate Present 3J
TS19: trigeminal ganglion Absent 3J

Specimen 3K: embryonic day 11.5 (more )
Structure Level Pattern Image Note
TS19: trigeminal ganglion Absent 3K

Specimen 3L: embryonic day 11.5 (more )
Structure Level Pattern Image Note
TS19: metencephalon floor plate Present 3L
TS19: myelencephalon floor plate Present 3L

Specimen 4A: embryonic day 9.5 (more )
Structure Level Pattern Image Note
TS15: future hindbrain Present Regionally restricted 4A Expression is in the floor plate.

Specimen 4C: embryonic day 10.5 (more )
Structure Level Pattern Image Note
TS17: neural tube lateral wall Present Regionally restricted 4C Expression is in the motor neurons in the ventro-lateral part.
TS17: neural tube floor plate Present 4C
TS17: notochord Present 4C

Specimen 4E: embryonic day 11.5 (more )
Structure Level Pattern Image Note
TS19: neural tube lateral wall Present Regionally restricted 4E Expression is in a subset of motor neurons at the dorsal and medial regions of the motor column.
TS19: neural tube floor plate Present 4E

Specimen 4H: embryonic day 11.5 (more )
Note: Digitally superimposed images; green - Crim1; red - Isl1 (assay MGI:3033456); blue - Vsx2 (assay MGI:3033650).
Structure Level Pattern Image Note
TS19: future spinal cord Present 4H

Specimen 4I: embryonic day 11.5 (more )
Structure Level Pattern Image Note
TS19: neural tube lateral wall Present Regionally restricted 4I Expression is in the medial region ofthe motor column. Section is at the thoracic level.
TS19: neural tube floor plate Present 4I

Specimen 4L: embryonic day 11.5 (more )
Note: Digitally superimposed images; green - Crim1; red - Isl1 (assay MGI:3033456); blue - Vsx2 (assay MGI:3033650).
Structure Level Pattern Image Note
TS19: future spinal cord Present 4L

Specimen 4M: embryonic day 13.5 (more )
Structure Level Pattern Image Note
TS21: spinal cord floor plate Weak 4M
TS21: spinal cord lateral wall Weak Regionally restricted 4M Expression is in the LMC (lateral motor column) motor neurons, and in few motor neurons in the lateral part of the MMC (medial motor column). Section is at the brachial level.

Specimen 4P: embryonic day 13.5 (more )
Note: Digitally superimposed images; green - Crim1; red - Isl1 (assay MGI:3033456); blue - Vsx2 (assay MGI:3033650).
Structure Level Pattern Image Note
TS21: spinal cord Present 4P

Specimen 4Q: embryonic day 13.5 (more )
Structure Level Pattern Image Note
TS21: spinal cord floor plate Weak 4Q
TS21: spinal cord lateral wall Present Regionally restricted 4Q Expression is in an intermediate region of the spinal cord.
TS21: basal columns Present Regionally restricted 4Q Expression is in the medial motor columns and is absent in the preganglionic motor neurons which have migrated to the lateral horn of the thoracic spinal cord.

Specimen 4T: embryonic day 13.5 (more )
Note: Digitally superimposed images; green - Crim1; red - Isl1 (assay MGI:3033456); blue - Vsx2 (assay MGI:3033650).
Structure Level Pattern Image Note
TS21: spinal cord Present 4T

Specimen 4U: embryonic day 15.5 (more )
Structure Level Pattern Image Note
TS23: ventral grey horn Strong 4U
TS23: spinal cord Present 4U

Specimen 4W: embryonic day 15.5 (more )
Structure Level Pattern Image Note
TS23: ventral grey horn Strong 4W
TS23: spinal cord Present 4W


Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
05/07/2024
MGI 6.23
The Jackson Laboratory