About   Help   FAQ
Gene Expression Data
Assay Details
Assay
Reference: J:184976 Narboux-Neme N, et al., Integration of H-2Z1, a Somatosensory Cortex-Expressed Transgene, Interferes with the Expression of the Satb1 and Tbc1d5 Flanking Genes and Affects the Differentiation of a Subset of Cortical Interneurons. J Neurosci. 2012 May 23;32(21):7287-7300
Assay type: Immunohistochemistry
MGI Accession ID: MGI:8215620
Gene symbol: Satb1
Gene name: special AT-rich sequence binding protein 1
Results
Specimen 2D Satb1: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS22: deep cerebellar nucleus Present Regionally restricted 2D Satb1 Expression in cerebellum restricted to fastigial nucleus.

Specimen 3A Satb1 P1: postnatal day 1 (more )
Structure Cell Type Level Pattern Image Note
TS27: cerebral cortex cerebral cortex neuron Present Uniform 3A P1 Planar distribution of expressing neurons is uniform at P1.

Specimen 3A Satb1 P7: postnatal day 7 (more )
Structure Level Pattern Image Note
TS28: cerebral cortex Present Regionally restricted 3A P7 Distribution of expression becomes regionally modulated by P7.

Specimen 3A Satb1 P9: postnatal day 9 (more )
Structure Level Pattern Image Note
TS28: cerebral cortex Present Regionally restricted 3A P9 Distribution of expression becomes regionally modulated by P7.

Specimen 3B P3 Satb1: postnatal day 3 (more )
Note: Double labeled: green - Satb1; red - Slc6a4 (assay MGI:8215621).
Structure Level Pattern Image Note
TS27: barrel cortex Present Regionally restricted 3B P3 Satb1 , 3B P3 merged Expression accumulated at bottom of barrels at P3 and P5.

Specimen 3B P5 Satb1: postnatal day 5 (more )
Note: Double labeled: green - Satb1; red - Slc6a4 (assay MGI:8215621).
Structure Level Pattern Image Note
TS28: barrel cortex Present Regionally restricted 3B P5 Satb1 , 3B P5 merged Expression accumulated at bottom of barrels at P3 and P5.

Specimen 3B P7 Satb1: postnatal day 7 (more )
Note: Double labeled: green - Satb1; red - Slc6a4 (assay MGI:8215621).
Structure Cell Type Level Pattern Image Note
TS28: barrel cortex cerebral cortex neuron Present Regionally restricted 3B P7 Satb1 , 3B P7 merged Beginning at P7, and more at P9, expression in neurons in barrel wall.

Specimen 3B P9 Satb1: postnatal day 9 (more )
Note: Double labeled: green - Satb1; red - Slc6a4 (assay MGI:8215621).
Structure Cell Type Level Pattern Image Note
TS28: barrel cortex cerebral cortex neuron Present Regionally restricted 3B P9 merged , 3B P9 Satb1 Beginning at P7, and more at P9, expression in neurons in barrel wall.

Specimen 3C Satb1: postnatal day 2 (more )
Note: Triple labeled: green - Satb1; red - Bcl11b (assay MGI:8215623); blue - Cux1 (assay MGI:8215622).
Structure Level Pattern Image Note
TS27: parietal cortex Present Regionally restricted 3C Merge , 3C Satb1
TS27: cerebral cortex marginal zone Strong 3C Satb1 , 3C Merge Strong expression in marginal zone.
TS27: cortical plate Weak 3C Satb1 , 3C Merge Scarce expression in cortical plate.
TS27: neocortex layer Present Regionally restricted 3C Merge , 3C Satb1 Broad expression in deep layers.

Specimen 3D Sastb1: postnatal day 2 (more )
Note: Double labeled: green - Satb1; red - Rorb (assay MGI:8215615).
Structure Level Pattern Image Note
TS27: cortical layer IV Present 3D Merge , 3D Satb1 Partial coexpression with Rorb mRNA in cortical plate and layer IV.
TS27: cortical plate Present 3D Merge , 3D Satb1 Partial coexpression with Rorb mRNA in cortical plate and layer IV.

Specimen 3E Sastb1: postnatal day 2 (more )
Note: Double labeled: green - Satb1; red - Satb2 (assay MGI:8215624).
Structure Level Pattern Image Note
TS27: parietal cortex Present Regionally restricted 3E Merge , 3E Satb1 Partial overlap in expression with Satb2.

Specimen 4A Satb1: embryonic day 18.5 (more )
Note: Double labeled: green - Satb1; red - GABA.
Structure Level Pattern Image Note
TS26: parietal cortex Present Regionally restricted 4A Merge , 4A Satb1 Largely coexpressed with GABA.

Specimen 4B Satb1: embryonic day 18.5 (more )
Note: Double labeled: green - Satb1; red - Cre reporter.
Structure Cell Type Level Pattern Image Note
TS26: parietal cortex cerebral cortex neuron Present Regionally restricted 4B Satb1 , 4B Merge Expression in subset of Dlx5/6-Cre-labeled neuron.

Specimen 4C Satb1: embryonic day 18.5 (more )
Note: Double labeled: green - Satb1; red - Sst (assay MGI:8215625).
Structure Cell Type Level Pattern Image Note
TS26: parietal cortex cortical interneuron Present Regionally restricted 4C Merge , 4C Satb1 Expression in majority of Sst-expression cortical interneurons.

Specimen 5C WT: embryonic day 17.5 (more )
Structure Level Pattern Image Note
TS25: forebrain Present 5C WT

Specimen 6A WT Satb1: embryonic day 18.5 (more )
Note: Double labeled: green - Satb1; red - Satb2 (assay MGI:8215624).
Structure Cell Type Level Pattern Image Note
TS26: parietal cortex cerebral cortex neuron Present 6A Satb1 , 6A Merge

Specimen 6C WT Satb1: embryonic day 18.5 (more )
Note: Double labeled: green - Satb1; red - Bcl11b (assay MGI:8215623).
Structure Cell Type Level Pattern Image Note
TS26: parietal cortex cerebral cortex neuron Present 6C Satb1 , 6C Merge

Specimen 7D Satb1: embryonic day 18.5 (more )
Note: Double labeled: red - Satb1; green - Tbc1d5 (assay MGI:8215613).
Structure Level Pattern Image Note
TS26: forebrain Present 7D Satb1 , 7D Satb1 inset , 7D Merge

Specimen 7E Satb1: embryonic day 18.5 (more )
Note: Triple labeled: blue - Satb1; red - Tbc1d5 (assay MGI:8215613); green - GABA.
Structure Level Pattern Image Note
TS26: forebrain Present 7E

Specimen 7F WT Satb1: embryonic day 18.5 (more )
Note: Triple labeled: green - Satb1; red - Sst (assay MGI:8215625); blue - Tbr1 (assay MGI:8215626).
Structure Level Pattern Image Note
TS26: amygdala Present 7F WT Satb1 , 7F WT Merge Expression in vitrually all neurons of lateral amygdalar nucleus.

Specimen 7G WT Satb1: embryonic day 18.5 (more )
Note: Triple labeled: green - Satb1; red - Sst (assay MGI:8215625); blue - Tbr1 (assay MGI:8215626).
Structure Level Pattern Image Note
TS26: brain nucleus Present 7G WT Merge , 7G WT Satb1 Intense expression in well delimited group of nuclei.


Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
Warranty Disclaimer, Privacy Notice, Licensing, & Copyright
Send questions and comments to User Support.
last database update
09/08/2026
MGI 6.24
The Jackson Laboratory