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Gene Expression Data
Assay Details
Assay
Reference: J:116537 Burgaya F, et al., Semaphorin 6C leads to GSK-3-dependent growth cone collapse and redistributes after entorhino-hippocampal axotomy. Mol Cell Neurosci. 2006 Nov;33(3):321-34
Assay type: RNA in situ
MGI Accession ID: MGI:7786979
Gene symbol: Sema6c
Gene name: sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6C
Probe: Sema6c cDNA
Probe preparation: Antisense labelled with digoxigenin RNA
Visualized with: Alkaline phosphatase
Results
Specimen 1A: embryonic day 16.0 (more )
Structure Level Pattern Image Note
TS24: cortical plate Very strong 1A
TS24: amygdala Strong 1A
TS24: cerebral cortex Strong 1A
TS24: corpus striatum Strong 1A
TS24: hippocampus Strong 1A
TS24: main olfactory bulb layer Strong Regionally restricted 1A Expression is in several layers.
TS24: thalamic nucleus Strong Regionally restricted 1A Expression is in several nuclei.
Specimen 1B: postnatal day 0 (more )
Structure Level Pattern Image Note
TS27: main olfactory bulb layer Strong Regionally restricted 1B Expression is in several layers.
Specimen 1C: embryonic day 14.0 (more )
Structure Level Pattern Image Note
TS22: cortical plate Very strong 1C
TS22: cerebral cortex Strong 1C
TS22: facial nerve Strong 1C
TS22: hippocampus Strong 1C
TS22: rhombic lip Present 1C
TS22: hindbrain Strong Regionally restricted 1C Expression is in the migratory derived streams, including the inferior olive tract.
Specimen 1D: embryonic day 18.0 (more )
Structure Level Pattern Image Note
TS26: inferior colliculus Strong 1D
TS26: superior colliculus Strong 1D
TS26: rhombic lip Present 1D
TS26: hindbrain Present Regionally restricted 1D Expression is in the migratory derived streams, including the inferior olive tract.
Specimen 1E: postnatal day 0 (more )
Structure Level Pattern Image Note
TS27: amygdala Strong 1E
TS27: cerebral cortex Strong 1E
TS27: corpus striatum Strong 1E
TS27: cortical plate Strong 1E
TS27: hippocampus Strong 1E
TS27: main olfactory bulb layer Strong Regionally restricted 1E Expression is in several layers.
TS27: thalamic nucleus Strong Regionally restricted 1E Expression is in several nuclei.
Specimen 1F: postnatal day 5 (more )
Structure Level Pattern Image Note
TS28: amygdala Strong 1F
TS28: cerebral cortex Strong 1F
TS28: corpus striatum Strong 1F
TS28: hippocampus Strong 1F
TS28: main olfactory bulb layer Strong Regionally restricted 1F Expression is in several layers.
TS28: thalamic nucleus Strong Regionally restricted 1F Expression is in several nuclei.
Specimen 1G: postnatal day 5 (more )
Structure Cell Type Level Pattern Image Note
TS28: cerebral cortex Strong 1G
TS28: hippocampus CA1 Strong 1G
TS28: hippocampus granule cell layer Strong 1G
TS28: hippocampus pyramidal cell layer Strong 1G
TS28: hippocampus hippocampal interneuron Strong 1G Expression is in interneurons.
TS28: hippocampus CA3 Present 1G
Specimen 1H: postnatal day 10 (more )
Structure Cell Type Level Pattern Image Note
TS28: cerebral cortex Strong 1H
TS28: hippocampus CA1 Strong 1H
TS28: hippocampus granule cell layer Strong 1H
TS28: hippocampus pyramidal cell layer Strong 1H
TS28: hippocampus hippocampal interneuron Strong 1H Expression is in interneurons.
TS28: hippocampus CA3 Present 1H
Specimen 1I: postnatal day 15 (more )
Structure Cell Type Level Pattern Image Note
TS28: cerebral cortex Strong 1I
TS28: hippocampus CA1 Strong 1I
TS28: hippocampus granule cell layer Strong 1I
TS28: hippocampus pyramidal cell layer Strong 1I
TS28: hippocampus hippocampal interneuron Strong 1I Expression is in interneurons.
TS28: hippocampus CA3 Present 1I
Specimen 1J: postnatal day 15 (more )
Structure Level Pattern Image Note
TS28: cerebellum Purkinje cell layer Present 1J
TS28: cerebellum external granule cell layer Present 1J
TS28: cerebellum internal granule cell layer Weak 1J
Specimen 1K: postnatal adult (more )
Structure Level Pattern Image Note
TS28: cerebellum Purkinje cell layer Present 1K
TS28: cerebellum external granule cell layer Present 1K
TS28: cerebellum internal granule cell layer Weak 1K
Specimen 1L: postnatal day 15 (more )
Structure Level Pattern Image Note
TS28: cerebellum Purkinje cell layer Present 1L
TS28: cerebellum external granule cell layer Present 1L
TS28: cerebellum internal granule cell layer Weak 1L
Specimen not shown Adult: postnatal adult (more )
Structure Level Pattern Image Note
TS28: cerebral cortex Present
TS28: hippocampus Present
Specimen S3A: postnatal day 21 (more )
Structure Level Pattern Image Note
TS28: brain subventricular zone Strong S3A
TS28: main olfactory bulb granule cell layer Strong S3A
TS28: main olfactory bulb mitral cell layer Strong S3A
TS28: rostral migratory stream Strong S3A
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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03/18/2025
MGI 6.24 		The Jackson Laboratory