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Gene Expression Data
Assay Details
Assay
Reference: J:159509 Zhong SC, et al., Expression and subcellular location of alpha-synuclein during mouse-embryonic development. Cell Mol Neurobiol. 2010 Apr;30(3):469-82
Assay type: Immunohistochemistry
MGI Accession ID: MGI:7707900
Gene symbol: Snca
Gene name: synuclein, alpha
Antibody: a-Synuclein (Ab-136) Antibody #21278
Detection system: Biotinylated secondary antibody/[Strept]avidin coupled to horseradish peroxidase
Assay notes: Another anti-alpha-syn (4D6) gave similar results.
Results
Specimen 1C: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS22: hippocampus Strong Regionally restricted 1C Expressed in dentate gyrus.

Specimen 1E: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS22: dorsal root ganglion Present 1E

Specimen 2A: embryonic day 10.5 (more )
Note: The boxed areas are highlighted in the corresponding figures (3A, 4A).
Structure Level Pattern Image Note
TS17: dorsal root ganglion Present 2A
TS17: forebrain marginal layer Present 2A
TS17: hindbrain marginal layer Present 2A
TS17: midbrain marginal layer Present 2A
TS17: nasal pit Present 2A

Specimen 2B: embryonic day 12.5 (more )
Note: The boxed areas are highlighted in the corresponding figures (3B, 3F,4B, 4E, 5B, 5G).
Structure Level Pattern Image Note
TS20: forebrain marginal layer Present 2B
TS20: olfactory epithelium Present 2B
TS20: sensory ganglion Present 2B
TS20: pons Strong Diffuse 2B
TS20: midbrain marginal layer Present Regionally restricted 2B Expressed in the dorsal region.
TS20: midbrain Present Regionally restricted 2B Expression in the ventral midbrain diffused.
TS20: cerebellum primordium Very strong Regionally restricted 2B Expression was most prominent in the deep cerebellar nuclei.
TS20: medulla oblongata Moderate 2B
TS20: spinal cord Moderate 2B

Specimen 2C: embryonic day 14.5 (more )
Note: The boxed areas are highlighted in the corresponding figures ( 3G, 3I, 4C, 4F, 4K, 5D, 5E).
Structure Level Pattern Image Note
TS22: cerebral cortex marginal layer Strong 2C
TS22: cortical subplate Strong 2C
TS22: midbrain Present Regionally restricted 2C Expression in the dorsal midbrain diffused to the intermediate zone.
TS22: midbrain marginal layer Present Regionally restricted 2C Expression in the dorsal region.

Specimen 2D: embryonic day 16.5 (more )
Note: The boxed areas are highlighted in the corresponding figures (3H, 4G).
Structure Level Pattern Image Note
TS24: cerebellum Present Regionally restricted 2D Expression diffused to the cortical region.
TS24: deep cerebellar nucleus Weak 2D Only slightly stained.

Specimen 3A: embryonic day 10.5 (more )
Structure Level Pattern Image Note
TS17: telencephalon marginal layer Present Regionally restricted 3A Expressed in the marginal layer of the olfactory bulb.

Specimen 3B: embryonic day 12.5 (more )
Structure Level Pattern Image Note
TS20: telencephalon Present Regionally restricted 3B Expression became more prominent in the mitral layer.

Specimen 3C: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS22: main olfactory bulb mitral cell layer Present 3C

Specimen 3D: embryonic day 16.5 (more )
Structure Level Pattern Image Note
TS24: main olfactory bulb mitral cell layer Present 3D

Specimen 3E: embryonic day 10.5 (more )
Structure Level Pattern Image Note
TS17: telencephalon Present Regionally restricted 3E No expression in the neocortex.

Specimen 3F: embryonic day 12.5 (more )
Structure Level Pattern Image Note
TS20: cortical preplate Moderate 3F

Specimen 3G: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS22: cerebral cortex marginal layer Strong 3G
TS22: cortical subplate Strong 3G
TS22: cortical plate Weak 3G Lightly stained.

Specimen 3H: embryonic day 16.5 (more )
Structure Level Pattern Image Note
TS24: cerebral cortex marginal layer Strong 3H
TS24: cortical subplate Strong 3H

Specimen 3I: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS22: telencephalon Strong Regionally restricted 3I Expressed in the primordial dentate gyrus and ventral hippocampal commissure. Expressed in the nuclei.

Specimen 3J: postnatal day 21 (more )
Structure Level Pattern Image Note
TS28: hippocampus Present 3J Expressed in the nonnuclear compartments.
TS28: hippocampal commissure Present Regionally restricted 3J Expressed in the nonnuclear compartments in the ventral region.

Specimen 3K: postnatal day 0 (more )
Structure Level Pattern Image Note
TS27: main olfactory bulb glomerular layer Strong 3K
TS27: main olfactory bulb mitral cell layer Strong 3K
TS27: main olfactory bulb external plexiform layer Strong 3K The granular cell layer.

Specimen 3L: postnatal day 0 (more )
Structure Level Pattern Image Note
TS27: cerebral cortex Present Regionally restricted 3L Expression pattern diffused, with the most abundant in the subplate, and the immunoreactions became less abundant in the neuronal cell bodies and were more apparent in the neuropil. However, no immunoreactions were found in the ventricular zone.
TS27: cortical subplate Strong 3L
TS27: cerebral cortex ventricular zone Absent 3L

Specimen 4A: embryonic day 10.5 (more )
Structure Level Pattern Image Note
TS17: hindbrain Moderate Regionally restricted 4A Expressed in the upper rhombic lip (rostral roof of the hindbrain), where the cerebellar primordium is destined to be formed. Expressed in the nuclei.
TS17: midbrain Present Regionally restricted 4A Expressed in the caudal midbrain. Expressed in the nuclei.

Specimen 4B: embryonic day 12.5 (more )
Structure Level Pattern Image Note
TS20: midbrain marginal layer Present Regionally restricted 4B Expressed in a layer of cells in the dorsal region. Expressed in the nuclei.

Specimen 4C: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS22: midbrain lateral wall Present Scattered 4C Positive cells of the dorsal midbrain migrated to the inner layers and were scattered in the intermediate zone.

Specimen 4D: embryonic day 16.5 (more )
Structure Level Pattern Image Note
TS24: midbrain lateral wall Present Regionally restricted 4D Expressed in the deep intermediate zone. Most of the expressions were found in the non-nuclear compartments.

Specimen 4E: embryonic day 12.5 (more )
Structure Level Pattern Image Note
TS20: brain nucleus Strong Regionally restricted 4E Strongly expressed in the deep cerebellar nuclei neurons.

Specimen 4F: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS22: deep cerebellar nucleus Very strong 4F Expressed in the nuclei.
TS22: cerebellum gray matter Weak Regionally restricted 4F The cortical regions were also lightly stained.

Specimen 4G: embryonic day 16.5 (more )
Structure Level Pattern Image Note
TS24: cerebellar cortex Present 4G Expression was condensed in the cortical regions.
TS24: deep cerebellar nucleus Weak 4G

Specimen 4H: postnatal day 0 (more )
Structure Cell Type Level Pattern Image Note
TS27: cerebellum Purkinje cell layer Purkinje cell Strong 4H Predominantly expressed in the Purkinje cells, which are cell bodies sandwiched between two layers individually consisting of the upper and deep populations of presumptive granule neurons.

Specimen 4I: embryonic day 9.5 (more )
Structure Level Pattern Image Note
TS15: midbrain-hindbrain junction Present Regionally restricted 4I Expressed in a subset of cells in the dorsal region. Expressed in the nuclei.

Specimen 4J: embryonic day 10.5 (more )
Structure Level Pattern Image Note
TS17: midbrain-hindbrain junction Present Regionally restricted 4J Expressed in the marginal layer in the dorsal region. Expressed in the nuclei.

Specimen 4K: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS22: midbrain Strong Regionally restricted 4K Expressed in the ventral regions where substantia nigra and ventral tegmental area are derived from. Distributed in the cell bodies as well as in the processes. Expressed in the nuclei.

Specimen 4L: postnatal day 21 (more )
Structure Level Pattern Image Note
TS28: substantia nigra Present 4L Detected in the cytoplasm and the processes in a subset of cells. A dense positive nerve fiber network was formed. Expressed in the non-nuclear compartments.
TS28: ventral tegmental area Present 4L Detected in the cytoplasm and the processes in a subset of cells. A dense positive nerve fiber network was formed. Expressed in the non-nuclear compartments.

Specimen 4M: embryonic day 10.5 (more )
Structure Level Pattern Image Note
TS17: hindbrain Moderate Regionally restricted 4M Expressed in the pons marginal zone, localized in the cell bodies as well as in the nerve fibers.

Specimen 4N: embryonic day 12.5 (more )
Structure Level Pattern Image Note
TS20: pons marginal layer Strong 4N Expressed in the nerve fibers.
TS20: pons Strong Regionally restricted 4N Expressed in some cell bodies in the intermediate zone.

Specimen 4O: embryonic day 10.5 (more )
Structure Level Pattern Image Note
TS17: neural tube lateral wall Present Regionally restricted 4O Expressed in the marginal zone

Specimen 4P: embryonic day 12.5 (more )
Structure Level Pattern Image Note
TS20: spinal cord marginal layer Moderate 4P Expressed in the neural fibers.
TS20: spinal cord Moderate Regionally restricted 4P Expressed in a subset of cells of the intermediate zone.

Specimen 5A: embryonic day 10.5 (more )
Structure Level Pattern Image Note
TS17: dorsal root ganglion Moderate 5A Expression was distributed in the whole cell bodies and in the processes.

Specimen 5B: embryonic day 12.5 (more )
Structure Level Pattern Image Note
TS20: dorsal root ganglion Very strong 5B Expression was distributed in the whole cell bodies and in the processes. Expressed in the nuclei.

Specimen 5C: embryonic day 16.5 (more )
Structure Level Pattern Image Note
TS24: dorsal root ganglion Very strong 5C Most of the expression exhibited a non-nuclear location.

Specimen 5D: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS22: trigeminal ganglion Strong 5D Expression was distributed in the whole cell bodies and in the processes.

Specimen 5E: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS22: glossopharyngeal ganglion Moderate 5E Expression was distributed in the whole cell bodies and in the processes.

Specimen 5F: embryonic day 16.5 (more )
Structure Level Pattern Image Note
TS24: brain nucleus Very strong Regionally restricted 5F Expressed in the nerve fibers of anterior olfactory nucleus. Most of the expression exhibited a non-nuclear location.

Specimen 5G: embryonic day 12.5 (more )
Structure Level Pattern Image Note
TS20: olfactory epithelium Strong 5G Expressed in the nuclei.
TS20: nasal cavity respiratory epithelium Absent 5G

Specimen 5H: embryonic day 16.5 (more )
Structure Level Pattern Image Note
TS24: olfactory epithelium Very strong 5H Most of the expressions were found in the non-nuclear compartments.

Specimen 5I: postnatal adult (more )
Structure Level Pattern Image Note
TS28: retina nerve fiber layer Present 5I

Specimen not shown: embryonic day 9.5 (more )
Structure Level Pattern Image Note
TS15: future midbrain Present
TS15: future hindbrain Present Regionally restricted Expressed in parts of those structures that later developed from it, including the cerebellum and the pons.

Specimen not shown: embryonic day 10.5 (more )
Structure Level Pattern Image Note
TS17: hindbrain Weak Regionally restricted Expressed in the marginal zone of the medulla oblongata.
TS17: telencephalon Weak Regionally restricted Expressed in the anterior olfactory nucleus. No expression in the olfactory ventricle, neocortex intermediate and ventricular zones.
TS17: olfactory epithelium Weak
TS17: future spinal cord Trace Very low.
TS17: retina Trace Very low.

Specimen not shown: embryonic day 11.5 (more )
Structure Level Pattern Image Note
TS19: rhombic lip Moderate Regionally restricted Expressed in the upper rhombic lip.
TS19: dorsal root ganglion Moderate
TS19: facial ganglion Moderate
TS19: olfactory epithelium Moderate
TS19: trigeminal ganglion Moderate
TS19: telencephalon Moderate Regionally restricted Expressed in the anterior olfactory nucleus. Weak expression in the main olfactory bulb mitral cell layer. No expression in the olfactory ventricle, neocortex intermediate and ventricular zones.
TS19: future spinal cord Weak
TS19: glossopharyngeal ganglion Weak
TS19: retina Weak
TS19: vagus ganglion Weak
TS19: cranial ganglion Weak Regionally restricted Expressed in vestibulo-cochlear ganglion.
TS19: hindbrain Weak Regionally restricted Expressed in the medulla oblongata.
TS19: midbrain Weak Regionally restricted Expressed in the substantia nigra. No expression in the periaqueductal gray area, inferior colliculus and superior colliculus.

Specimen not shown: embryonic day 12.5 (more )
Structure Level Pattern Image Note
TS20: telencephalon Present Regionally restricted Expressed in the primordial hippocampus. Strong expression in main olfactory bulb mitral cell layer, very low expression in the granule and glomerular layers. No expression in the olfactory ventricle, caudate putamen, neocortex intermediate and ventricular zones. Weak expression in globus pallidus and accumbens nucleus, very low expression in the amygdaloid complex.
TS20: midbrain Present Regionally restricted Expressed in the caudal midbrain. No expression in the periaqueductal gray area, inferior colliculus and superior colliculus.
TS20: hindbrain Present Regionally restricted Expressed in the rostral hindbrain. Moderately expressed in the substantia nigra.
TS20: midbrain-hindbrain junction Present Regionally restricted Expressed in the marginal layer in the dorsal region.
TS20: facial ganglion Strong
TS20: trigeminal ganglion Strong
TS20: vestibulo-cochlear ganglion Strong
TS20: glossopharyngeal ganglion Moderate
TS20: retina Moderate
TS20: vagus ganglion Moderate
TS20: brain nucleus Very strong Regionally restricted Expressed in the anterior olfactory nucleus.
TS20: rhombic lip Moderate Regionally restricted Expressed in the upper rhombic lip.
TS20: metencephalon alar plate Trace Regionally restricted Expressed in the cerebellum external germinative cell layer.
TS20: cerebral cortex intermediate zone Absent
TS20: cerebral cortex ventricular layer Absent

Specimen not shown: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS22: pons Strong Regionally restricted Expressed in some cell bodies in the intermediate zone.
TS22: spinal cord lateral wall Strong Regionally restricted Expressed in some cell bodies in the intermediate zone.
TS22: pons marginal layer Strong More extensive expression in the nerve fibers.
TS22: spinal cord marginal layer Strong More extensive expression in the nerve fibers.
TS22: brain nucleus Very strong Regionally restricted Expressed in the anterior olfactory nucleus.
TS22: facial ganglion Strong
TS22: medulla oblongata Strong
TS22: retina Strong
TS22: vestibulo-cochlear ganglion Strong
TS22: globus pallidus Moderate
TS22: vagus ganglion Moderate
TS22: olfactory epithelium Very strong
TS22: cerebellum gray matter Weak Regionally restricted Expressed in the cerebellum external germinative cell layer.
TS22: midbrain Present Regionally restricted No expression in the periaqueductal gray area, inferior colliculus and superior colliculus.
TS22: main olfactory bulb mitral cell layer Very strong
TS22: caudate-putamen Absent
TS22: cerebral cortex ventricular layer Absent
TS22: main olfactory bulb ventricular layer Absent
TS22: main olfactory bulb layer Trace Regionally restricted Very low expression in the granule and glomerular layers.
TS22: cerebral cortex intermediate zone Trace
TS22: telencephalon Weak Regionally restricted Weak expression in accumbens nucleus and amygdaloid complex.

Specimen not shown: embryonic day 16.5 (more )
Structure Level Pattern Image Note
TS24: facial ganglion Strong
TS24: globus pallidus Strong
TS24: hippocampus Strong
TS24: medulla oblongata Strong
TS24: retina Strong
TS24: spinal cord Strong
TS24: trigeminal ganglion Strong
TS24: vagus ganglion Strong
TS24: vestibulo-cochlear ganglion Strong
TS24: hippocampal commissure Strong Regionally restricted Expressed in the ventral region.
TS24: pons marginal layer Strong Expressed in the nerve fibers.
TS24: pons Strong Regionally restricted Expressed in some cell bodies in the intermediate zone.
TS24: cerebellum external granule cell layer Moderate
TS24: glossopharyngeal ganglion Moderate
TS24: midbrain Very strong Regionally restricted Expressed in the substantia nigra. Weak expression in inferior colliculus and superior colliculus. Very low expression in the periaqueductal gray area.
TS24: caudate-putamen Absent
TS24: cerebral cortex ventricular layer Absent
TS24: main olfactory bulb ventricular layer Absent
TS24: dentate gyrus primordium Very strong
TS24: main olfactory bulb mitral cell layer Very strong
TS24: cerebral cortex intermediate zone Weak
TS24: cortical plate Weak
TS24: main olfactory bulb prospective glomerular layer Weak
TS24: main olfactory bulb prospective granule cell layer Weak
TS24: brain nucleus Moderate Regionally restricted Expressed in accumbens nucleus, low expression in the amygdaloid complex.

Specimen not shown: embryonic day 18.5 (more )
Structure Level Pattern Image Note
TS26: cerebellum external granule cell layer Strong
TS26: cerebral cortex marginal zone Strong
TS26: facial ganglion Strong
TS26: globus pallidus Strong
TS26: main olfactory bulb glomerular layer Strong
TS26: main olfactory bulb prospective granule cell layer Strong
TS26: medulla oblongata Strong
TS26: pons Strong
TS26: retina Strong
TS26: spinal cord Strong
TS26: trigeminal ganglion Strong
TS26: vagus ganglion Strong
TS26: vestibulo-cochlear ganglion Strong
TS26: main olfactory bulb external plexiform layer Strong The granular cell layer.
TS26: cerebral cortex Present Regionally restricted Expression pattern diffused, with the most abundant in the subplate, and the immunoreactions became less abundant in the neuronal cell bodies and were more apparent in the neuropil. However, no immunoreactions were found in the ventricular zone.
TS26: cortical subplate Strong
TS26: caudate-putamen Absent
TS26: cerebral cortex ventricular zone Absent
TS26: hippocampus Present Widespread Expression became extensive.
TS26: hippocampal commissure Strong Regionally restricted Expression became extensive in the ventral region.
TS26: midbrain Present Regionally restricted Expression diffused throughout the neuroepithelium of the dorsal midbrain. Weak expression in the periaqueductal gray area, inferior colliculus and superior colliculus.
TS26: deep cerebellar nucleus Weak
TS26: cerebellar cortex Present Expression was condensed in the cortical regions.
TS26: dentate gyrus Very strong
TS26: dorsal root ganglion Very strong
TS26: olfactory epithelium Very strong
TS26: substantia nigra Very strong
TS26: accumbens nucleus Moderate
TS26: cerebral cortex intermediate zone Moderate
TS26: cortical plate Moderate
TS26: glossopharyngeal ganglion Moderate
TS26: brain nucleus Very strong Regionally restricted Expressed in the anterior olfactory nucleus. Low expression in the amygdaloid complex.
TS26: main olfactory bulb mitral cell layer Very strong
TS26: main olfactory bulb ventricular layer Absent

Specimen not shown: postnatal day 0 (more )
Structure Level Pattern Image Note
TS27: hippocampus Present Widespread Expression became extensive.
TS27: hippocampal commissure Strong Regionally restricted Expression became extensive in the ventral region.
TS27: midbrain Present Regionally restricted Expression diffused throughout the neuroepithelium of the dorsal midbrain. Moderate expression in the periaqueductal gray area, inferior colliculus and superior colliculus.
TS27: dentate gyrus Very strong
TS27: main olfactory bulb mitral cell layer Very strong
TS27: olfactory epithelium Very strong
TS27: substantia nigra Very strong
TS27: cerebellum external granule cell layer Strong
TS27: cerebral cortex marginal zone Strong
TS27: globus pallidus Strong
TS27: main olfactory bulb glomerular layer Strong
TS27: main olfactory bulb granule cell layer Strong
TS27: medulla oblongata Strong
TS27: pons Strong
TS27: retina Strong
TS27: spinal cord Strong
TS27: amygdaloid nucleus Weak
TS27: deep cerebellar nucleus Weak
TS27: caudate-putamen Absent
TS27: main olfactory bulb ventricular layer Absent
TS27: accumbens nucleus Moderate
TS27: cerebral cortex intermediate zone Moderate
TS27: cortical plate Moderate


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last database update
03/25/2025
MGI 6.24
The Jackson Laboratory