About   Help   FAQ
Gene Expression Data
Assay Details
Assay
Reference: J:327901 Ye Q, et al., Understanding the development of oral epithelial organs through single cell transcriptomic analysis. Development. 2022 Aug 15;149(16):dev200539
Assay type: RNA in situ
MGI Accession ID: MGI:7615298
Gene symbol: Shh
Gene name: sonic hedgehog
Probe: Mm-Shh (314361)
Probe preparation: Antisense DNA
Visualized with: Fluorescence
Results
Specimen 7F: embryonic day 9.5 (more )
Note: Triple labeled: white - Shh; red - Pitx2 (assay MGI:7615297); green - Tfap2b (assay MGI:7615296).
Structure Level Pattern Image Note
TS15: 1st branchial arch endoderm Present Regionally restricted 7F' , 7F Expression was detected in the oropharyngeal endoderm.
Specimen 7G: embryonic day 10.0 (more )
Note: Triple labeled: white - Shh; red - Pitx2 (assay MGI:7615297); green - Tfap2b (assay MGI:7615296).
Structure Level Pattern Image Note
TS16: 1st branchial arch endoderm Present Regionally restricted 7G , 7G' Expression was detected in the oropharyngeal endoderm.
Specimen 7H: embryonic day 10.5 (more )
Note: Triple labeled: white - Shh; red - Pitx2 (assay MGI:7615297); green - Tfap2b (assay MGI:7615296).
Structure Level Pattern Image Note
TS17: 1st branchial arch endoderm Present Regionally restricted 7H' , 7H Expression was detected in the oropharyngeal endoderm.
Specimen 7I: embryonic day 11.0 (more )
Note: Triple labeled: white - Shh; red - Pitx2 (assay MGI:7615297); green - Tfap2b (assay MGI:7615296).
Structure Level Pattern Image Note
TS18: 1st branchial arch endoderm Present Regionally restricted 7I , 7I' Expression was detected in the oropharyngeal endoderm.
Specimen 7J: embryonic day 12.0 (more )
Note: Triple labeled: white - Shh; red - Pitx2 (assay MGI:7615297); green - Tfap2b (assay MGI:7615296).
Structure Level Pattern Image Note
TS20: tooth bud Present Regionally restricted 7J , 7J' Expression was detected in the initiation knot.
Specimen S8B E12.0 right: embryonic day 12.0 (more )
Structure Level Pattern Image Note
TS20: tooth bud Present Regionally restricted S8B E12.0 right Expression was detected in the initiation knot.
TS20: tongue Present Regionally restricted S8B E12.0 right Expression was detected in the taste bud primordia.
Specimen S9B: embryonic day 10.5 (more )
Note: Double labeled: red - Shh; cyan - Dmrt2 (assay MGI:7615292).
Structure Level Pattern Image Note
TS17: 1st branchial arch endoderm Present S9B
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
Warranty Disclaimer, Privacy Notice, Licensing, & Copyright
Send questions and comments to User Support. 		last database update
03/25/2025
MGI 6.24 		The Jackson Laboratory